Job Description P0A6X1 Confidence 97.15% Date Thu Jan 5 11:04:08 GMT 2012 Rank 338 Aligned Residues 134 % Identity 15% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.																.	.	.	180
Predicted Secondary structure																																																				.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	V	K	K	A	F	A	D	S	Q	K	G	H	M	K	A	S	E	L	E	R	M	F	Q	K	S	F	S	V	A	K	R	V	R	T	E	T	D	I	G	A	S	A	V	S	V	A	F	A	.	.	.	A	C	T	L	A	R	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	S	L
Query Conservation																																																				.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.														.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		K	N	Y	Y	G	A	A	K	M	I	F	S	D	N	P	L	G	L	T	C	G	M	V	C	P	T	S	D	L	C	V	G	G	C	N	L	.	Y	A	T	E	E	G	S	I	N	I	G	G	L	Q	Q	F	A	S	E	V	F	K	A	M	N	I	P	Q	I	R	N	P	C	L	P	S	Q	E	K	M	P	E	A
Template Known Secondary structure		T														T	T										G	G	G	S	G	G	G	G		G	G	.	G	G	S	T	T																				T				B			T	T	S			G	G	G	S		G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																					.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query Sequence		S	T	V	T	V	L	L	V	G	A	G	E	T	I	E	L	V	A	R	H	L	R	E	H	K	V	Q	K	M	I	I	A	N	R	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	A	Q	I	L	A	D	E	V	G	A	E	V	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G	K	S	L	S	E	N	E
Template Known Secondary structure		G	G									S														T									S	S	S	S		S	T					T	S		T	T	T	S														T	T	T						S			B	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	S	D	I	D	E	R	L	R	E	A	D	I	I	I	S	S	T	A	S	P	L	P
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		I	T	L	N	T	L	K	E	.	.	E	G	Y	K	A	A	F	I	G	I	G	L	P	E	P
Template Known Secondary structure		B								.	.	T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		266	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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