Job Description P0ABC9 Confidence 100.00% Date Thu Jan 5 11:15:11 GMT 2012 Rank 1 Aligned Residues 486 % Identity 24% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	V	F	Y	T	S	A	G	L	I	L	L	F	S	L	T	T	I	L	F	R	D	F	S	A	L	W	I	G	R	T	L	D	W	V	S	K	T	F	G	W	Y	Y	L	L	A	A	T	L	Y	I	V	F	V	V	C	I	A	C	S	R	F	G	S	V	K	L	G	P	E	Q	S	K	P	E	F	S	L	L
Query Conservation
Alig confidence																																																																							.	.
Template Conservation																																																																							.	.
Template Sequence		P	K	V	F	F	P	P	L	I	I	V	G	I	L	C	W	L	T	V	R	D	L	D	A	A	N	V	V	I	N	A	V	F	S	Y	V	T	N	V	W	G	W	A	F	E	W	Y	M	V	V	M	L	F	G	W	F	W	L	V	F	G	P	Y	A	K	K	R	L	G	.	.	N	E	P	P	E	F	S	T	A
Template Known Secondary structure			T	T	T													T	T	T	T																																									S	S	S	T	T	S		S	S	.	.	S	S			S	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.
Predicted Secondary structure																																			.																																													.
Query SS confidence																																			.																																													.
Query Sequence		S	W	A	A	M	L	F	A	A	G	I	G	I	D	L	M	F	F	S	V	A	E	P	V	T	Q	Y	M	Q	P	P	E	G	.	A	G	Q	T	I	E	A	A	R	Q	A	M	V	W	T	L	F	H	Y	G	L	T	G	W	S	M	Y	A	L	M	G	M	A	L	G	Y	F	S	Y	R	Y	N	L	P	.	L
Query Conservation																																			.																																													.
Alig confidence																																			.																																													.
Template Conservation
Template Sequence		S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I
Template Known Secondary structure									T					S																S		S	T	T			T	T																T	S																				T	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		T	I	R	S	A	L	Y	P	I	F	G	K	R	.	I	N	G	P	I	G	H	S	V	D	I	A	A	V	I	G	T	I	F	G	I	A	T	T	L	G	I	G	V	V	Q	L	N	Y	G	L	S	V	L	F	D	I	P	D	S	M	A	A	K	A	A	L	I	A	L	S	V	I	I	A	T	I	S	V	T	S
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C
Template Known Secondary structure		S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T	T				T																				S	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	D	K	G	I	R	V	L	S	E	L	N	V	A	L	A	L	G	L	I	L	F	V	L	F	M	G	D	T	S	F	L	L	N	A	L	V	L	N	V	G	D	Y	V	N	R	F	M	G	M	T	L	N	S	F	A	F	D	R	P	V	E	W	M	N	N	W	T	L	F	F	W	A	W	W	V	A	W	S
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	.	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A
Template Known Secondary structure					T	T																																																T					S	S			.						T											T
Template Predicted Secondary structure																																																															.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		P	F	V	G	L	F	L	A	R	I	S	R	G	R	T	I	R	Q	F	V	L	G	T	L	I	I	P	F	T	F	T	L	L	W	L	S	V	F	G	N	S	A	L	Y	E	I	I	H	G	G	A	A	F	A	E	E	A	M	V	.	H	P	E	R	G	F	Y	S	L	L	A	Q	Y	P	A	F	T	F	S	A
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M
Template Known Secondary structure											T		S	S																																			T	T	S								G	G	G												T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	T	I	T	G	L	L	F	Y	V	T	S	A	D	S	G	A	L	V	L	G	N	F	T	S	Q	L	K	D	I	N	S	D	A	P	G	W	L	R	V	F	W	S	V	A	I	G	L	L	T	L	G	M	L	M	T	N	G	I	S	A	L	Q	N	T	T	V	I	M	G	L	P	F	S	F	V	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I
Template Known Secondary structure																										T	T	S		S	S	S	S	S		S	S		S	T	T																				S	S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	M	A	G	L	Y	K	S	L	K	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	T	L	S	F	I	K	D	A	K	Q	N
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.