Job Description P0ABC9 Confidence 96.86% Date Thu Jan 5 11:15:11 GMT 2012 Rank 7 Aligned Residues 370 % Identity 12% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	P	E	F	S	L	L	S	W	A	A	M	L	F	A	A	G	I	G	I	D	L	M	F	F	S	V	A	E	P	V	T	Q	Y	M	Q	P	P	E	G	A	G	Q	T	I	E	A	A	R	Q	A	M	V	W	T	L	F	H	Y	G	L	T	G	W	S	M	Y	A	L	M	G	M	A	L	G	Y	F	S	Y
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	.	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A
Template Known Secondary structure						B																		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S									G	G	G						.																			T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.																			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	N	L	P	L	T	I	R	S	A	L	Y	P	I	F	G	K	R	I	N	G	P	I	G	H	S	V	D	I	A	A	V	I	G	T	I	F	G	I	A	T	T	L	G	I	G	V	V	Q	L	N	Y	G	L	S	V	L	F	D	I	P	D	S	M	A	A	K	A	A	L	I	A	L	S	V	I	I	A	T
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N	I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	.	.	.	.	.	.	.	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T
Template Known Secondary structure		T				T	T	T											S	S																								.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	V	T	S	G	V	D	K	G	I	R	V	L	S	E	L	N	V	A	L	A	L	G	L	I	L	F	V	L	F	M	G	D	T	S	F	L	L	N	A	L	V	L	N	V	G	D	Y	V	N	R	F	M	G	M	T	L	N	S	F	A	F	D	R	P	V	E	W	M	N	N	W	T	L	F	F	W	A	W
Query Conservation
Alig confidence									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	N	F	F	G	S	.	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L	F	I	F	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F
Template Known Secondary structure							T		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G	T	S				S														G
Template Predicted Secondary structure									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	A	W	S	P	F	V	G	L	F	L	A	R	I	S	R	G	R	T	I	R	Q	F	V	L	G	T	L	I	I	P	F	T	F	T	L	L	W	L	S	V	F	G	N	S	A	L	Y	E	I	I	H	G	G	A	A	F	A	E	E	A	M	V	H	P	E	R	G	F	Y	S	L	L	A	Q	Y	P	A	F
Query Conservation
Alig confidence																																																		.	.	.	.
Template Conservation																																																		.	.	.	.
Template Sequence		F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	.	.	.	.	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F
Template Known Secondary structure		G	G	G	G	T							T	T	G	G	G	B	S	S																													T	.	.	.	.	T	S								T	G	G	G
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.			.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		T	F	S	A	S	V	A	T	I	T	G	L	L	F	Y	V	T	S	A	D	S	G	A	L	V	L	G	N	F	T	S	Q	L	K	D	I	N	.	.	S	D	A	P	G	W	L	R	V	F	W	S	V	A	I	G	L	L	T	L	G	M	L	M	T	N	G	I	S	A	L	Q	N	T	T	V	I	M	G	L	P
Query Conservation																																							.	.
Alig confidence																																							.	.																																.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	.	.	.	A	S	I	T	S	A	V
Template Known Secondary structure																					T	T	T											S	S			S	S			T	T	S			S		T																	S						.	.	.
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	F	V	I	F	F	V	M	A	G	L	Y	K	S	L	K	V	E	D	Y	R	R	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.