Job Description P0ABC9 Confidence 97.95% Date Thu Jan 5 11:15:11 GMT 2012 Rank 4 Aligned Residues 351 % Identity 13% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	V	W	T	L	F	H	Y	G	L	T	G	W	S	M	Y	A	L	M	G	M	A	L	G	Y	F	S	Y	R	Y	N	L	P	L	T	I	R	S	A	L	Y	P	I	F	G	K	R	I	N	G	P	I	G	H	S	V	D	I	A	A	V	I	G	T	I	F	G	I	A	T	T	L	G	I	G	V	V	Q	L
Query Conservation
Alig confidence																																												.								.	.	.
Template Conservation																																												.								.	.	.
Template Sequence		G	S	G	Y	S	I	G	L	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	E	K	G	I	Y	T	I	P	E	.	F	V	E	K	R	F	N	.	.	.	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G
Template Known Secondary structure							T		G	G	G																		T							T	T			S				.						T		.	.	.																		T
Template Predicted Secondary structure																																												.								.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	G	L	S	V	L	F	D	I	P	D	S	M	A	A	K	A	A	L	I	A	L	S	V	I	I	A	T	I	S	V	T	S	G	V	D	K	G	I	R	V	L	S	E	L	N	V	A	L	A	L	G	L	I	L	F	V	L	F	M	G	D	T	S	F	L	L	N	A	L	V	L	N	V	G	D	Y	V	N
Query Conservation
Alig confidence														.	.	.	.																						.																													.
Template Conservation														.	.	.	.																						.																													.
Template Sequence		G	L	A	L	E	T	I	L	G	I	P	L	.	.	.	.	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W	T	D	.	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	.	F	A	G	V	S	K	M	V	D	A	A	P	G
Template Known Secondary structure									T	T				.	.	.	.														T	T				S			.																								T	T	S			.												G	G
Template Predicted Secondary structure														.	.	.	.																						.																													.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.											360	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	M	G	M	T	L	N	S	F	A	F	D	R	P	V	E	W	M	N	N	W	T	L	F	F	W	A	W	W	V	A	W	S	P	F	V	G	L	F	L	A	R	I	S	R	G	R	T	I	R	Q	F	V	L	G	T	L	I	I	P	F	.	.	.	.	.	.	.	.	.	.	T	F	T	L	L	W	L	S
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V
Template Known Secondary structure		G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T									S	S	S																			G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.						.	.	440	.	.
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		V	F	G	N	S	A	L	Y	E	I	I	H	G	G	A	A	F	A	E	E	A	M	V	H	P	E	R	G	F	Y	S	L	L	A	Q	Y	P	A	F	T	F	S	A	S	V	A	T	I	T	G	L	L	F	Y	V	T	S	A	D	S	G	A	L	V	L	G	N	F	T	S	.	.	.	.	.	Q	L	K	D	I
Query Conservation																																																																								.	.	.	.	.
Alig confidence																																							.	.																																.	.	.	.	.
Template Conservation																																							.	.
Template Sequence		I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	.	.	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P
Template Known Secondary structure														T	T			S					S	S	S	G	G	G							T	T			.	.	T	T																																T							S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	D	A	P	G	W	L	R	V	F	W	S	V	A	I	G	L	L	T	L	G	M	L	M	T	N	G	I	S	A	L	Q	N	T	T	V	I	M	G	L	P	F	S	F	V	I	F	F	V	M	A	G	L	Y	K	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L
Template Known Secondary structure			S		S	S																					G	G	G	G	G	G		S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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