Job Description P0ABC9 Confidence 97.47% Date Thu Jan 5 11:15:11 GMT 2012 Rank 6 Aligned Residues 389 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	S	K	P	E	F	S	L	L	S	W	A	A	M	L	F	A	A	G	I	G	I	D	L	M	F	F	S	V	A	E	P	V	T	Q	Y	M	Q	P	P	E	G	A	G	Q	T	I	E	A	A	R	Q	A	M	V	W	T	L	F	H	Y	G	L	T	G	W	S	M	Y	A	L	M	G	M	A	L	G	Y	F
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F
Template Known Secondary structure			G	G	G			B															S	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	R	Y	N	L	P	L	T	I	R	S	A	L	Y	P	I	F	G	K	R	I	N	G	P	I	G	H	S	V	D	I	A	A	V	I	G	T	I	F	G	I	A	T	T	L	G	I	G	V	V	Q	L	N	Y	G	L	S	V	L	F	D	I	P	D	S	M	A	A	K	A	A	L	I	A	L	S	V	I	I
Query Conservation
Alig confidence																	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		T	Q	S	A	A	I	R	W	G	I	N	F	T	V	A	.	.	.	.	.	.	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I
Template Known Secondary structure			T														.	.	.	.	.	.	T	T	T	T	S		T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	I	S	V	T	S	G	V	D	K	G	I	R	V	L	S	E	L	N	V	A	L	A	L	G	L	I	L	F	V	L	F	M	G	D	T	S	F	L	L	N	A	L	V	L	N	V	G	D	Y	V	N	R	F	M	G	M	T	L	N	S	F	A	F	D	R	P	V	E	W	M	N	N	W	T	L	F	F	W
Query Conservation
Alig confidence											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	V	T	T	F	Y	G	I	.	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F
Template Known Secondary structure							T	T			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T							T	T				S	S			S
Template Predicted Secondary structure											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	W	V	A	W	S	P	F	V	G	L	F	L	A	R	I	S	R	G	R	T	I	R	Q	F	V	L	G	T	L	I	I	P	F	T	F	T	L	L	W	L	S	V	F	G	N	S	A	L	Y	E	I	I	H	G	G	A	A	F	A	E	E	A	M	V	H	P	E	R	G	F	Y	S	L	L	A	Q	Y	P
Query Conservation
Alig confidence																																																										.	.
Template Conservation																																																										.	.
Template Sequence		V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	.	.	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V
Template Known Secondary structure			T	T	T					T	T	T					T	T	B				T	T																																		.	.							S		S											T
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	F	S	A	S	V	A	T	I	T	G	L	L	F	Y	V	T	S	A	D	S	G	A	L	V	L	G	N	F	T	S	Q	L	K	D	I	N	S	D	A	P	G	W	L	R	V	F	W	S	V	A	I	G	L	L	T	L	G	M	L	M	T	N	G	I	S	A	L	Q	N	T	T	V	I	M	G	L	P
Query Conservation
Alig confidence																																					.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	.	.	.	.	.	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A
Template Known Secondary structure																			T	T						T											.	.	.	.	.	S	T	T	T																	T		G	G	G	T														T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.						330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	F	V	I	F	F	V	M	A	G	L	Y	K	S	L	K	V	E	D	Y	R	R	E	S	A	N	R	D	T	A	P	R	P	L	G	L	Q	D	R	L	S	W
Query Conservation
Alig confidence																														.	.	.
Template Conservation																														.	.	.
Template Sequence		L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	.	.	.	K	G	I	Y	T	Y	W	R	G	V	N	W
Template Known Secondary structure		T													T	T	S	T	T								T	B	S	.	.	.	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.				.	.	400	.	.	.	.	.	.	.	.	.