Return to main results Retrieve Phyre Job Id

Job DescriptionP62601
Confidence98.56%DateThu Jan 5 12:07:39 GMT 2012
Rank16Aligned Residues290
% Identity16%Templated1gaia_
SCOP infoalpha/alpha toroid Six-hairpin glycosidases Glucoamylase
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   169170.........180....... ..190.........200.... .....210.... .....220.
Predicted Secondary structure 







......

...................







..



Query SS confidence 


















. . . . . .
















. . . . . . . . . . . . . . . . . . .









. .






Query Sequence  FSETYYWDSYFTMLGLAES. . . . . . GREDLLKCMADNFAWMI. . . . . . . . . . . . . . . . . . . ENYGHIPNGN. . RTYYLSR
Query Conservation 


 







  


 
......     
  

 

  

...................   
 



 ..
 


 
Alig confidence 


















......
















...................









..


...
Template Conservation 
 
 
 



 
  

   
          
  

     

   

 
     






  

    
 




...
Template Sequence  YFYTWTRDSGLVIKTLVDLFRNGDTDLLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWGRPQ. . . R
Template Known Secondary structure 

STT
GGG

BTTB
TTTTGGG


TTS
B

S

S


...T
Template Predicted Secondary structure 






































...
Template SS confidence 















































































   48.50.........60.........70.........80.........90.........100.........110.........120... .
 
   222.......230...... ...240..... ....250.........260.........270.........280.........290.....
Predicted Secondary structure 


.....

.






























Query SS confidence 














. . . . .








.

















































Query Sequence  SQPPVFALMVELFEE. . . . . DGVRGARRY. LDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDES
Query Conservation 





  

     ..... 
   
   . 
 
  

  
   
     
              
 

      




Alig confidence 














.....








.

























........................
Template Conservation 

 


  

  
   
             
  
   
 

   
  

 




 ........................
Template Sequence  DGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEV. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
TTTS

TTS

........................
Template Predicted Secondary structure 














........................
Template SS confidence 















































































   126...130.........140.........150.........160.........170.........180.
 
   296...300.........310.........320.........330.........340.........350.........360.........370.....
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  WLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETE
Query Conservation 



   
          
    
 










      
 

 
  
 





 
      

 

  

    
Alig confidence  ...........................







......................



















..
Template Conservation  ........................... 
 
 

 ......................
    

      
   

 ..
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . NGSSFFTI. . . . . . . . . . . . . . . . . . . . . . AVQHRALVEGSAFATAVGSS. . C
Template Known Secondary structure  .................................................TT

..
Template Predicted Secondary structure  ...........................



......................



..
Template SS confidence 















































































   182....... 190.........200......... 210
 
   376...380.........390.........400.........410.........420..... ....430.........440.......
Predicted Secondary structure 















........







Query SS confidence 

















































. . . . . . . .





















Query Sequence  ALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQLALFSAAAIVPLYVG. . . . . . . . MANHEQADRLANAVRSRLLTPG
Query Conservation        
     

   




 
   


           
   

  
........      
  
   
   
   
Alig confidence 















.
































........





















Template Conservation        
  
   
  .              
 


   

 

             
 
 
  

 
   
       
Template Sequence  SWCDSQAPQILCYLQS. FWTGSYILANFDSSRSGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALANHKEVVDSFRSIY
Template Known Secondary structure  GG.GB
SSSB
SS

S



TTT

TT

S
TTTT
TTSTTTTT
Template Predicted Secondary structure  .




































Template SS confidence 















































































   211........220...... ...230.........240.........250.........260.........270.........280.........
 
   448.450 .........460.........470.........480...
Predicted Secondary structure 
.........


















...................................
Query SS confidence 


. . . . . . . . .
































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  GIL. . . . . . . . . ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 


.........

   

 







 
   





  

  ...................................
Alig confidence 


.........
































...................................
Template Conservation   

       
 







 
 




 
 

 


  
             
      
                
  
Template Sequence  TLNDGLSDSEAVAVGRYPEDSYYNGNPWFLCTLAAAEQLYDALYQWDKQGSLEITDVSLDFFKALYSGAATGTYSSSSST
Template Known Secondary structure  GGGTT

TTS




S
TT

GGGS

BT
TTT
TT

STTS
Template Predicted Secondary structure 












































Template SS confidence 















































































   290.........300.........310.........320.........330.........340.........350.........360.........
 
   484.....490.........500.........510.........520.........530.........540.....
Predicted Secondary structure  .....
























Query SS confidence  . . . . .





























































Query Sequence  . . . . . LLGDEIARSWLKTVNQFYLEQHKLIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGL
Query Conservation  .....


  

 


         

 
 



     
  
 



  
 







 
 

  
Alig confidence  .....







































........













Template Conservation         
   

 

  
  
    
 



    

 
 

 
........





 

 
   
Template Sequence  YSSIVSAVKTFADGFVSIVETHAASNGSLSEQFDKSDGDELSARD. . . . . . . . LTWSYAALLTANNR
Template Known Secondary structure  S
TT



S
TTT

SSSS........
Template Predicted Secondary structure 




















........
Template SS confidence 


































































   370.........380.........390.........400.........410.... .....420........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions