Job Description P62601 Confidence 37.06% Date Thu Jan 5 12:07:39 GMT 2012 Rank 31 Aligned Residues 237 % Identity 15% Template c3k7xA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. Resolution 1.89 Å

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		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.																						.	.	.					.	.
Query SS confidence																								.	.	.	.	.	.	.																						.	.	.					.	.
Query Sequence		P	G	G	R	F	S	E	T	Y	Y	W	D	S	Y	F	T	M	L	G	L	A	E	.	.	.	.	.	.	.	S	G	R	E	D	L	L	K	C	M	A	D	N	F	A	W	M	I	E	N	Y	.	.	.	G	H	I	P	.	.	N	G	N	R	T	Y	Y	L	S	R	S	Q	P	P	V	F	A	L	M	V	E
Query Conservation																								.	.	.	.	.	.	.																						.	.	.					.	.
Alig confidence																								.	.	.	.	.	.	.																						.	.	.					.	.
Template Conservation
Template Sequence		N	G	G	T	L	I	H	D	F	Y	D	D	X	L	W	N	A	L	A	A	Y	R	L	Y	K	A	T	G	K	S	I	Y	L	E	D	A	Q	L	V	W	Q	D	L	V	D	T	G	W	N	D	I	X	G	G	G	F	A	W	R	R	P	Q	X	Y	Y	K	N	T	P	V	N	A	P	F	I	I	L	S	C	W
Template Known Secondary structure		T	T	S	S	S			S	B																																						T	B		S	G	G	G	S		B				T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		233	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		L	F	.	E	E	D	G	V	R	G	A	R	R	Y	L	D	H	L	K	M	E	Y	A	F	W	M	D	G	A	E	S	L	I	P	N	Q	A	Y	R	H	V	V	R	M	P	D	G	S	L	L	N	R	Y	W	D	D	R	D	T	P	R	D	E	S	W	L	E	D	V	E	T	A	K	H	S	G	R	P	P	N
Query Conservation				.
Alig confidence				.							.	.	.	.																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	N	E	L	N	E	T	K	.	.	.	.	Y	L	E	W	A	X	K	T	Y	E	W	Q	T	K	V	.	L	V	R	E	D	G	F	V	E	D	G	I	N	R	L	E	D	G	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											.	.	.	.																.		B		T	T	S		B						T	T	S	S	S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		E	V	Y	R	D	L	R	A	G	A	A	S	G	W	D	Y	S	S	R	W	L	R	D	T	G	R	L	A	S	I	R	T	T	Q	F	I	P	I	D	L	N	A	F	L	F	K	L	E	S	A	I	.	.	.	A	N	I	S	A	L	K	G	E	K	E	T	E	A	L	F	R	Q	K	A	S	A	R	R	D	A
Query Conservation																																																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.												.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	E	W	K	F	T	Y	N	Q	G	V	Y	I	G	A	N	L	E	L	Y	R	I	T	K	E	A	I	.	.	.	.	Y	L	D	T	A	N	K	T	A	A	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T																										.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
																																							206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.	.	240	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.			.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		V	N	R	Y	L	W	D	D	E	N	G	I	Y	R	D	Y	D	W	R	R	E	Q	L	A	L	F	S	A	A	A	I	V	P	L	Y	V	G	M	A	N	H	E	Q	A	D	R	L	A	N	A	V	R	S	.	.	R	L	L	T	P	G	G	I	L	A	S	E	Y	E	T	G	E	Q	W	D	K	P	N	G	W
Query Conservation																																																							.	.
Alig confidence																																																							.	.																							.
Template Conservation																																																																															.
Template Sequence		S	L	K	E	L	T	E	D	G	I	F	K	D	E	G	N	G	G	D	E	G	L	F	K	G	I	F	Y	R	Y	F	T	D	L	I	E	E	T	A	N	K	T	Y	R	D	F	V	L	N	S	C	Q	I	L	V	E	N	A	K	L	D	G	Y	L	L	X	G	X	N	W	K	E	K	P	S	G	K	.	I	P
Template Known Secondary structure									T	T							S	S	S	G	G	G	G																	T																						T	T						S		S	S	S		S		S		.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.
		467	.	.	470				.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		A	P	L	Q	.	.	.	W	M	A	I	Q	G	F	K	M
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		Y	S	A	E	L	S	G	X	I	A	L	E	X	A	A	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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