Job Description P0AFG0 Confidence 99.96% Date Thu Jan 5 11:26:08 GMT 2012 Rank 5 Aligned Residues 142 % Identity 20% Template c3p8bB_ PDB info PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Resolution 1.80 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	D	A	S	W	H	L	V	R	S	V
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	I	F	A	V	R	V	T	H	G	Q	E	E	T	T	A	K	L	I	Y	S	K	V	R	T	Y	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	Y	A	I	L	A	P	S	R	V	K	G	Y	I	F	V	E	A	P	N	K	G	V	V	D	E	A	I	R	G	I
Template Known Secondary structure											T	T																	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T			S							S	S									T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.																				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D	K	P	R	P	K	T	L	F	E	P	G	E	M	V	R	V	N	D	G	P	F	A	D	F	N	G	V	V	E	E	V	D	Y	E	K	S	R	L	K	V	S	V	S	I	F	G
Query Conservation
Alig confidence								.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																.	.	.	.	.	.	.
Template Sequence		R	H	A	R	G	V	.	.	.	.	.	.	L	P	G	E	V	P	F	K	E	I	E	H	F	L	E	.	.	.	.	.	.	.	E	K	P	A	V	S	G	L	E	P	G	D	L	V	E	V	I	A	G	P	F	K	G	Q	K	A	K	V	V	K	I	D	E	S	K	D	E	V	V	V	Q	F	I	D	A	I
Template Known Secondary structure		T	T					.	.	.	.	.	.		S	S		B		G	G	G	T	G	G	G			.	.	.	.	.	.	.		S		T	T	T	T			T	T							S	S	T	T	T	T										T	T	T	T							S	S		S
Template Predicted Secondary structure								.	.	.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		167	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	T	P	V	E	L	D	F	S	Q	V	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	I	P	V	T	I	K	G	D	Y	V	R	L
Template Known Secondary structure		S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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