Job Description P0AFG0 Confidence 98.22% Date Thu Jan 5 11:26:08 GMT 2012 Rank 14 Aligned Residues 90 % Identity 16% Template c3h7hB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) Resolution 1.55 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	D	A	S	W	H	L	V	R
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	D	P	N	L	W	T	V	K	C	K	I	G	E	E	R	A	T	A	I	S	L	M	R	K	F	I	A	Y	Q	F	T	D	T	P	L	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	V	V	A	P	E	H	V	K	G	Y	I	Y	V	E	A	Y	K	Q	T	H	V	K	Q	A	I	E
Template Known Secondary structure													T	T																	T	T	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T			S							S	S									T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.															.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		G	V	G	N	L	R	L	.	.	.	.	G	Y	W	N	Q	Q	M	V	P	I	K	E	M	T	D	V	L
Template Known Secondary structure		T		G	G	G	G	G	.	.	.	.	G	S	S							G	G	G	T	T	G	G	G
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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