 |
Job Description | P0AFG0 | Confidence | 17.77% | Date | Thu Jan 5 11:26:08 GMT 2012 |
Rank | 62 | Aligned Residues | 45 |
% Identity | 18% | Template | c2y35A_ |
PDB info |
PDB header:hydrolase/dna | Chain: A: PDB Molecule:ld22664p; |
PDBTitle: crystal structure of xrn1-substrate complex
|
Resolution | 3.20 Å |
|
  |   |
117 | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | G | D | K | P | R | P | K | T | L | F | E | P | G | E | M | V | R | V | N | D | G | P | F | A | D | F | N | G | V | V | E | E | V | D | Y | E | K | S | R | L | K | V | S | V | S | I | F |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|
|
|   |
|   |   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |
|
|   |   |
|   |
|   |   |   | . | . | . | . |   |   |   |
|
|   |
|   |
|   |
Template Sequence |   |
E | R | K | N | F | L | N | V | E | H | Y | F | P | V | G | S | T | I | F | L | I | T | D | P | Y | Y | G | S | E | G | T | V | Q | D | P | . |
. |
. |
. |
R | R | I | Q | V | S | I | M | V | R |
Template Known Secondary structure |   |
|
|
|
|
|
| S |  |  |  |  | S |
| T | T |
|  |  |  |  |
| S | G | G | G | T | T |
|  |  |  |  |  |  |  | . | . | . | . |
|
|  |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
798 | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | . | . | . | . | . | . | 820 | . | . | . | . | . | . | . | . | . | 830 | . | . | |
|
|
|
. | . | . | . | . | . | . | 840 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|