Job Description P0AFG0 Confidence 99.97% Date Thu Jan 5 11:26:08 GMT 2012 Rank 3 Aligned Residues 140 % Identity 18% Template c2ougC_ PDB info PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution Resolution 2.10 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	D	A	S	W	H	L	V	R	S	V
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	W	Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	Q	.	.	.	.	.	.	.	.	.	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N	A	T
Template Known Secondary structure											T	T	T											T	.	.	.	.	.	.	.	.	.	T														S	S	S	S								S	S	T	T								T	T	T	S								S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.										.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D	K	P	R	P	K	T	L	F	E	P	G	E	M	V	R	V	N	D	G	P	F	A	D	F	N	G	V	V	E	E	V	D	Y	E	K	S	R	L	K	V	S	V	S	I	F	G
Query Conservation
Alig confidence											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		R	G	V	S	H	F	V	R	F	.	G	A	S	P	A	I	V	P	S	A	V	I	H	Q	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	K	K	V	I	I	T	E	G	A	F	E	G	F	Q	A	I	F	T	E	P	D	G	E	A	.	R	S	M	L	L	L	N	L	I	N
Template Known Secondary structure		T	T							S	.	S	S	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T			T	T	T												T	T		S	S				.
Template Predicted Secondary structure											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		73	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.
		167	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	T	P	V	E	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	I	K	H	S	V	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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