Job Description P0AFG0 Confidence 98.27% Date Thu Jan 5 11:26:08 GMT 2012 Rank 13 Aligned Residues 91 % Identity 13% Template c2exuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Resolution 2.23 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		S	E	A	P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	.	.	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	D	A	S
Query Conservation																																					.	.
Alig confidence																																					.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	S	G	S	A	T	I	W	G	V	R	C	R	P	G	K	E	K	E	L	I	R	K	L	L	K	K	K	F	N	L	D	R	A	M	G	K	K	K	L	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	I	F	Q	R	D	N	Y	T	G	R	I	Y	I	E	A	P	K	Q	S	V	I
Template Known Secondary structure		T	S		S											T	T																				S		S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	T	T							S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.															140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	L	V	R	S	V	P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M
Query Conservation
Alig confidence														.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		E	K	F	C	N	G	V	P	D	I	Y	I	.	.	.	.	.	.	S	Q	K	L	L	I	P	V	Q	E	L	P	L	L	L
Template Known Secondary structure						T	T		T	T				.	.	.	.	.	.								G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.							.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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