Job Description P0AFG0 Confidence 100.00% Date Thu Jan 5 11:26:08 GMT 2012 Rank 1 Aligned Residues 175 % Identity 42% Template c1m1gB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	L	E	K	K	W	Y	A	L	Q	V	E	P	G	K	E	N	E	A	K	E	N	L	L	K	V	L	E	L	E	G	L	K	D	L	V	D	E	V	I	V	P	A	E	E	K	V	V	I	R	A	Q	G	K	E	K	Y	R	L	S	L	K	G	N	A	R	D	I	S	V	L	G	K	K	G	V	T	T	F
Template Known Secondary structure															T	T											T						T		G	G	G																	S	S	S							S	S	S	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
																																						53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	D	A	S	W	H	L	V	R	S	V	P	R	V	M	G	F	I	G	G	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation																																																																																	.
Template Sequence		R	I	E	N	G	E	V	K	V	V	E	S	V	E	G	D	T	C	V	N	A	P	P	I	S	K	P	G	Q	K	I	T	C	K	E	N	K	T	E	A	K	I	V	L	D	N	K	I	F	P	G	Y	I	L	I	K	A	H	M	N	D	K	L	L	M	A	I	E	K	T	P	H	V	F	R	P	V	M	V	.
Template Known Secondary structure					S	S									T	T		G	G	G	T	S			B		S	T	T						T	T	T	T									T	T	S	S	T	T																		T	S	T	T								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D	K	P	R	P	K	T	L	F	E	P	G	E	M	V	R	V	N	D	G	P	F	A	D	F	N	G	V	V	E	E	V	D	Y	E	K	S	R	L	K	V	S	V	S	I	F	G	R	A	T	P	V	E	L	D	F	S
Query Conservation
Alig confidence																														.	.
Template Conservation																														.	.
Template Sequence		G	G	K	P	V	P	L	K	E	E	E	V	Q	N	I	L	N	Q	I	K	R	G	V	K	P	S	K	V	.	.	E	F	E	K	G	D	Q	V	R	V	I	E	G	P	F	M	N	F	T	G	T	V	E	E	V	H	P	E	K	R	K	L	T	V	M	I	S	I	F	G	R	M	T	P	V	E	L	D	F	D
Template Known Secondary structure		T	T															T	T	T	S	S	S							.	.	S			T	T							S	S	T	T	T	T							S			T	T	S	S									T	T									G	G
Template Predicted Secondary structure																														.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		177	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	E	K
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions