Job Description P0ABS5 Confidence 99.89% Date Thu Jan 5 11:16:14 GMT 2012 Rank 7 Aligned Residues 177 % Identity 20% Template d1nuia1 SCOP info DNA primase core DNA primase core Primase fragment of primase-helicase protein Resolution 2.90

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	A	T	S	A	R	Q	Y	L	E	K	R	G	L	S	H	E	V	I	A	R	F	A	I	G	F	A	P	P	G	W	D	N	V	L	K	R	F	G	G	N	P	E	N	R	Q	S	L	I	D	A	G	M	L	V	T	N	D	Q	G	R	S	Y	D	R	F	R	E	R	V	M	F	P	I	R	D	K	R	G
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	S	N	G	R	Y	S	A	L	T	A	R	G	I	S	K	E	T	C	Q	K	A	G	Y	W	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	V	D	G	V	M	Y	Q	V	A	D	Y	R	D	Q	N	G
Template Known Secondary structure		G	G	T	T		B				B	G	G	G	T	B									T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T											T	T	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																																				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		R	V	I	G	F	G	G	R	V	L	G	N	D	T	P	K	Y	L	N	S	P	E	T	D	I	F	H	K	G	R	Q	L	Y	G	L	Y	E	A	Q	Q	D	N	A	E	P	N	R	L	L	V	V	E	G	Y	M	D	V	V	A	L	A	Q	Y	G	I	N	Y	.	.	.	A	V	A	S	L	G	T	S	T	T
Query Conservation																																																																					.	.	.
Alig confidence															.								.	.	.	.	.	.											.	.	.	.																											.	.	.
Template Conservation															.								.	.	.	.	.	.											.	.	.	.
Template Sequence		N	I	V	S	Q	K	V	R	D	K	D	K	N	.	F	K	T	T	G	S	H	.	.	.	.	.	.	K	S	D	A	L	F	G	K	H	L	.	.	.	.	W	N	G	G	K	K	I	V	V	T	E	G	E	I	D	M	L	T	V	M	E	L	Q	D	C	K	Y	P	V	V	S	L	G	H	G	A	S	A	A
Template Known Secondary structure											T	T			.								.	.	.	.	.	.		T	T			T	T	G	G	G	.	.	.	.				B	S						S	S												T	T		S						T	T	T	T	T	T
Template Predicted Secondary structure															.								.	.	.	.	.	.											.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		291	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		A	D	H	I	Q	L	L	F	R	.	.	.	A	T	N	N	V	I	C	C	Y	D	G	D	R	A	G	R	D	A	A	W	R	A	L	E	T	A	L	P	Y	M	T	D	G	R	Q	L	R	F	M	F	L	P	D	G	E	D	P	D	T	L	V	R	K	E	G	K	E	A	F	E	A	R	M
Query Conservation											.	.	.
Alig confidence											.	.	.																										.	.	.						.	.								.
Template Conservation																																							.	.	.						.	.								.
Template Sequence		K	K	T	C	A	A	N	Y	E	Y	F	D	Q	F	E	Q	I	I	L	M	F	D	M	D	E	A	G	R	K	A	V	E	E	A	A	Q	V	.	.	.	L	P	A	G	K	.	.	V	R	V	A	V	L	P	.	C	K	D	A	N	E	C	H	L	N	G	H	D	R	E	I	M	E	Q	V
Template Known Secondary structure								T					T	T	B	S								S	S														.	.	.	S		T	T	T	.	.							S	.	S	S	S						T	T	T	T
Template Predicted Secondary structure																																							.	.	.						.	.								.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.			.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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