Job Description P0ABS5 Confidence 100.00% Date Thu Jan 5 11:16:14 GMT 2012 Rank 2 Aligned Residues 309 % Identity 99% Template d1dd9a_ SCOP info DNA primase core DNA primase core DNA primase DnaG catalytic core Resolution 1.60

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	Q	L	M	D	G	L	N	T	F	Y	Q	Q	S	L	Q	Q	P	V	A	T	S	A	R	Q	Y	L	E	K	R	G	L	S	H	E	V	I	A	R	F	A	I	G	F	A	P	P	G	W	D	N	V	L	K	R	F	G	G	N	P	E	N	R	Q	S	L	I	D	A	G	M	L	V	T	N	D	Q	G	R
Query Conservation
Alig confidence																																																																													.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		L	Y	Q	L	M	D	G	L	N	T	F	Y	Q	Q	S	L	Q	Q	P	V	A	T	S	A	R	Q	Y	L	E	K	R	G	L	S	H	E	V	I	A	R	F	A	I	G	F	A	P	P	G	W	D	N	V	L	K	R	F	G	G	N	P	E	N	R	Q	S	L	I	D	A	G	M	L	V	T	.	.	.	N	R
Template Known Secondary structure																		T	S	G	G	G										T	T										T						S	S	S									S	S										T	T	S				.	.	.
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	D	R	F	R	E	R	V	M	F	P	I	R	D	K	R	G	R	V	I	G	F	G	G	R	V	L	G	N	D	T	P	K	Y	L	N	S	P	E	T	D	I	F	H	K	G	R	Q	L	Y	G	L	Y	E	A	Q	Q	D	N	A	E	P	N	R	L	L	V	V	E	G	Y	M	D	V	V	A	L	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	D	R	F	R	E	R	V	M	F	P	I	R	D	K	R	G	R	V	I	G	F	G	G	R	V	L	G	N	D	T	P	K	Y	L	N	S	P	E	T	D	I	F	H	K	G	R	Q	L	Y	G	L	Y	E	A	Q	Q	D	N	A	E	P	N	R	L	L	V	V	E	G	Y	M	D	V	V	A	L	A	Q
Template Known Secondary structure					S			S									T	T	S										S	S	S		S		S								S	S			T	T	T			B	T							T		S	S		S						S	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	I	N	Y	A	V	A	S	L	G	T	S	T	T	A	D	H	I	Q	L	L	F	R	A	T	N	N	V	I	C	C	Y	D	G	D	R	A	G	R	D	A	A	W	R	A	L	E	T	A	L	P	Y	M	T	D	G	R	Q	L	R	F	M	F	L	P	D	G	E	D	P	D	T	L	V	R	K	E	G	K
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		Y	G	I	N	Y	A	V	A	S	L	G	S	T	.	T	A	D	H	I	Q	L	L	F	R	A	T	N	N	V	I	C	C	Y	D	G	D	R	A	G	R	D	A	A	W	R	A	L	E	T	A	L	P	Y	M	T	D	G	R	Q	L	R	F	M	F	L	P	D	G	E	D	P	D	T	L	V	R	K	E	G	K
Template Known Secondary structure		T	T												.													S								S	S															G	G	G			T	T										T	T
Template Predicted Secondary structure															.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	F	E	A	R	M	E	Q	A	M	P	L	S	A	F	L	F	N	S	L	M	P	Q	V	D	L	S	T	P	D	G	R	A	R	L	S	T	L	A	L	P	L	I	S	Q	V	P	G	E	T	L	R	I	Y	L	R	Q	E	L	G	N	K	L	G	I	L	D	D	S	Q	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	F	E	A	R	M	E	Q	A	M	P	L	S	A	F	L	F	N	S	L	M	P	Q	V	D	L	S	T	P	D	G	R	A	R	L	S	T	L	A	L	P	L	I	S	Q	V	P	G	E	T	L	R	I	Y	L	R	Q	E	L	G	N	K	L	G	I	L	D	D	S	Q	L	E
Template Known Secondary structure									T	T													G	G	G			T	T	S																T	T																			T		S		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions