Return to main results Retrieve Phyre Job Id

Job DescriptionP0ABS5
Confidence98.25%DateThu Jan 5 11:16:14 GMT 2012
Rank11Aligned Residues135
% Identity14%Templatec2r6cG_
PDB info PDB header:replicationChain: G: PDB Molecule:dnag primase, helicase binding domain; PDBTitle: crystal form bh2
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   443......450.........460.........470.........480.........490.........500.........510.........520..
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  VPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMW
Query Conservation          
  

 
 
  


                                      
               
   
Alig confidence 


































































.











Template Conservation   

    


 

  

 
      
   
  

    

 

  
          
   
   
 
.
       
   
Template Sequence  LLPAFQNAERLLLAHXXRSRDVALVVQERIGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPG. ELQPLASELSLL
Template Known Secondary structure 





S

SSTT



TTSS
S.SSTS
Template Predicted Secondary structure 

















.
Template SS confidence 















































































   456...460.........470.........480.........490.........500.........510.........520.. .......530....
 
   523......530.........540.........550........ .560.........570.........580
Predicted Secondary structure 



..




Query SS confidence 



































. .





















Query Sequence  DDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARE. . RTHGLSNEERLELWTLNQELAK
Query Conservation                     
           
    ..        
   
  
   
 
Alig confidence 
..
































..





















Template Conservation   ..     
   
 


  
        
  
   
 

    
    
 
  
 
   
Template Sequence  L. . IADDVSEQELEDYIRHVLNRPKWLXLKVKEQEKTEAERRKDFLTAARIAKEXIEXKK
Template Known Secondary structure 
..

SS

TSTTTT
Template Predicted Secondary structure  ..








Template SS confidence 



























































   535 ....540.........550.........560.........570.........580.........590..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions