Job Description P0ABS5 Confidence 23.50% Date Thu Jan 5 11:16:14 GMT 2012 Rank 122 Aligned Residues 235 % Identity 19% Template c2pmzQ_ PDB info PDB header:translation, transferase Chain: Q: PDB Molecule:dna-directed rna polymerase subunit a; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																						.	.	.	.													.	.	.	.
Query SS confidence																						.	.	.	.													.	.	.	.
Query Sequence		F	G	C	G	A	H	G	N	A	I	D	F	L	M	N	Y	D	K	L	E	.	.	.	.	F	V	E	T	V	E	E	L	A	A	M	H	.	.	.	.	N	L	E	V	P	F	E	A	G	S	G	P	S	Q	I	E	R	H	Q	R	Q	T	L	Y	Q	L	M	D	G	L	N	T	F	Y	Q	Q	S	L	Q	Q
Query Conservation																						.	.	.	.													.	.	.	.
Alig confidence																						.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		I	G	N	Q	Q	P	E	S	I	L	H	W	L	I	K	E	Y	S	D	E	Y	G	K	W	L	M	D	N	L	F	R	V	F	I	R	F	V	E	L	Q	G	F	T	M	R	L	E	D	V	S	L	G	D	D	V	K	K	E	I	Y	N	E	I	D	R	A	K	V	E	V	D	N	L	I	Q	K	Y	K	N	G
Template Known Secondary structure			S	S		T	T	T									T	S		T	T									S									T	T	T						S	T	T	T				T	T							T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
		134	.	.	.													.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	A	T	.	.	.	.	.	.	.	.	.	.	.	.	S	A	R	Q	Y	L	E	K	R	G	L	S	H	E	V	I	A	R	F	A	I	G	F	A	P	P	G	W	D	N	V	L	K	R	F	G	G	N	P	E	N	R	Q	S	L	I	D	A	G	M	L	V	T	N	D	Q	G	R	S	Y	D	R	F	R
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.									.	.																																																			.	.	.	.
Template Conservation																										.	.																																																			.	.	.	.
Template Sequence		E	L	E	P	I	P	G	R	T	L	E	E	S	L	E	N	Y	I	L	D	T	L	D	K	.	.	L	R	S	T	A	G	D	I	A	S	K	Y	L	D	P	F	N	F	A	Y	V	M	A	R	T	G	A	R	G	S	V	L	N	I	T	Q	M	A	A	M	L	G	Q	Q	S	V	R	G	E	R	.	.	.	.
Template Known Secondary structure						B	T	T	B																	.	.										T	T	T	S		T	T	S						S	S	S	S	S	S											S							B	T	T	B		.	.	.	.
Template Predicted Secondary structure																										.	.																																																			.	.	.	.
Template SS confidence
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.			.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	V	M	F	P	I	R	D	K	R	G	R	V	I	G	F	G	G	R	V	L	G	N	D	T	P	K	Y	L	N	S	P	E	T	D	I	F	H	K	G	R	Q	L	Y	G	L	Y	E	A	Q	Q	D	N	A	E	P	N	R	L	L	V	V	E	G	Y	M	D	V	V	A	L	A	Q	Y	G	I	N	Y	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.													.																						.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.													.																						.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	I	K	R	G	Y	M	T	R	T	L	P	H	.	F	K	P	Y	D	I	S	P	E	A	R	G	F	I	Y	S	S	F	R	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	P	T	E	L	F	F	H	A	A	G	G	R	E	G	L	V	D	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.				S	S	S	S		S	S	T	T	.	S		S	S				T	T	S	S	S						T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.			T	T																.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.													.																						.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
														757	.	.	760	.	.	.	.	.	.	.	.		.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.														790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	S	L	G	T	S	T	T	A	D	H	I	Q	L	L	F	R	A	T	N	N	V	I	C	C	Y	D	G	D	R	A	G	R	D	A	A	W	R	A	L	E	T	A	L	P	Y	M	T	D	G	R	Q	L	R	F	M	F	L	P	D	G	E	D	P
Query Conservation
Alig confidence		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	T	A	V	R	T	S	Q	S	G	Y	M	Q	R	R	L	I	N	A	L	S	D	L	R	A	E	Y	D	G	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	L	Y	G	E	V	V	Q	V	A	Y	G	D	D	G	V	F	P
Template Known Secondary structure		.				T													T	T	S		S					T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S					S	S	G	G	G	S				G
Template Predicted Secondary structure		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			809	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.																.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions