Job Description P0ABS5 Confidence 100.00% Date Thu Jan 5 11:16:14 GMT 2012 Rank 1 Aligned Residues 402 % Identity 34% Template c2au3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	G	R	I	P	R	V	F	I	N	D	L	L	A	R	T	D	I	V	D	L	I	D	A	R	V	K	L	K	K	Q	G	K	N	F	H	A	C	C	P	F	H	N	E	K	T	P	S	F	T	V	N	G	E	K	Q	F	Y	H	C	F	G	C	G	A	H	G	N	A	I	D	F	L	M	N	Y	D	K	L
Query Conservation
Alig confidence				.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		M	S	.	.	.	.	.	S	D	I	D	E	L	R	R	E	I	D	I	V	D	V	I	S	E	Y	L	N	L	E	K	V	G	S	N	Y	R	T	N	C	P	F	H	P	D	D	T	P	S	F	Y	V	S	P	S	K	Q	I	F	K	C	F	G	C	G	V	G	G	D	A	I	K	F	V	S	L	Y	E	D	I
Template Known Secondary structure				.	.	.	.	.																				S						T	T							S	S	S			S	S							T	T	T	T					T	T	T															T
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		1	.						.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	V	E	T	V	E	E	L	A	A	M	H	N	L	E	V	P	F	E	A	G	S	G	P	S	Q	I	E	R	H	Q	R	Q	T	L	Y	Q	L	M	D	G	L	N	T	F	Y	Q	Q	S	L	Q	Q	P	V	A	T	S	A	R	Q	Y	L	E	K	R	G	L	S	H	E	V	I	A	R	F	A	I	G	F
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																											.	.
Template Conservation																			.	.	.	.	.	.	.	.																											.	.
Template Sequence		S	Y	F	E	A	A	L	E	L	A	K	R	Y	G	K	K	L	.	.	.	.	.	.	.	.	D	L	E	K	I	S	K	D	E	K	V	Y	V	A	L	D	R	V	C	D	F	Y	R	E	S	L	.	.	L	K	N	R	E	A	S	E	Y	V	K	S	R	G	I	D	P	K	V	A	R	K	F	D	L	G	Y
Template Known Secondary structure															T				.	.	.	.	.	.	.	.		T	T	S																							.	.													T	T									T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		A	P	P	G	W	D	N	V	L	K	R	F	G	G	N	P	E	N	R	Q	S	L	I	D	A	G	M	L	V	T	N	D	Q	G	R	S	Y	D	R	F	R	E	R	V	M	F	P	I	R	D	K	R	G	R	V	I	G	F	G	G	R	V	L	G	N	D	T	.	P	K	Y	L	N	S	P	E	T	D	I	F
Query Conservation																																																																					.
Alig confidence					.																											.																																					.
Template Conservation					.																											.
Template Sequence		A	P	S	.	S	E	A	L	V	K	V	L	K	E	N	D	L	L	E	A	Y	L	E	T	K	N	L	L	S	P	.	T	K	G	V	Y	R	D	L	F	L	R	R	V	V	I	P	I	K	D	P	R	G	R	V	I	G	F	G	G	R	R	I	V	E	D	K	S	P	K	Y	I	N	S	P	D	S	R	V	F
Template Known Secondary structure					.												T							T	T	T					S	.	S	T	T					T	T	T	T									T	T	S											S			S	S		S								S	S
Template Predicted Secondary structure					.																											.
Template SS confidence
		146	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	G	R	Q	L	Y	G	L	Y	E	A	Q	Q	D	N	A	E	P	N	R	L	L	V	V	E	G	Y	M	D	V	V	A	L	A	Q	Y	G	I	N	Y	A	V	A	S	L	G	T	S	T	T	A	D	H	I	Q	L	L	F	R	A	T	N	N	V	I	C	C	Y	D	G	D	R	A	G	R	D	A	A	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	G	E	N	L	F	G	L	Y	E	A	K	E	Y	I	K	E	E	G	F	A	I	L	V	E	G	Y	F	D	L	L	R	L	F	S	E	G	I	R	N	V	V	A	P	L	G	T	A	L	T	Q	N	Q	A	N	L	L	S	K	F	T	K	K	V	Y	I	L	Y	D	G	D	D	A	G	R	K	A	M	K
Template Known Secondary structure			G	G	G				T												T						S	S										T	T			S					S	S	S	S											T	T		S								S	S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	E	T	A	L	P	Y	M	T	D	G	R	Q	L	R	F	M	F	L	P	D	G	E	D	P	D	T	L	V	R	K	E	G	K	E	A	F	E	A	R	M	E	Q	A	M	P	L	S	A	F	L	F	N	S	L	M	P	Q	V	D	L	S	T	P	D	G	R	A	R	L	S	T	L	A	L	P	L	I
Query Conservation
Alig confidence							.	.	.																																																								.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																																								.	.	.	.	.	.	.	.
Template Sequence		S	A	I	P	L	.	.	.	L	L	S	A	G	V	E	V	Y	P	V	Y	L	P	E	G	Y	D	P	D	E	F	I	K	E	F	G	K	E	E	L	R	R	L	I	N	S	S	G	E	L	F	E	T	L	I	K	T	A	R	E	N	L	E	E	.	.	.	.	.	.	.	.	K	T	R	E	F	R	Y	Y	L
Template Known Secondary structure							.	.	.				T	T										T	T																																	G	G	G					.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.																																																								.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.									.	.	.	.	.	.	370	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	V	P	G	E	T	L	R	I	Y	L	R	Q	E	L	G	N	K	L	G	I	L	D	D	S	Q	L	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	I	S	D	G	V	R	R	F	A	L	A	S	E	F	H	T	K	Y	K	V	P	M	E	I	L	L	M	K	I
Template Known Secondary structure		T	T																										T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.