Job Description P0ABS5 Confidence 99.97% Date Thu Jan 5 11:16:14 GMT 2012 Rank 4 Aligned Residues 232 % Identity 20% Template c1nuiA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein Resolution 2.90 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	A	C	C	P	F	H	N	E	K	T	P	S	F	T	V	N	G	E	K	Q	F	Y	H	C	F	G	C	G	A	H	G	N	A	I	D	F	L	M	N	Y	D	K	L	E	F	V	E	T	V	E	E	L	A	A	M	H	N	L	E	V	P	F	E	A	G	S	G	P	S	Q	I	E	R	H	Q	R	Q	T
Query Conservation
Alig confidence														.						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation														.						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Sequence		Y	H	I	P	C	D	N	C	G	S	S	D	.	G	N	S	L	F	.	S	D	G	H	T	F	C	Y	V	C	E	K	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	K	E	R	A	S	K	R	K	P	S	G	G	K	P	G	T	Y	N	V	W	N	F	.	.	.	.
Template Known Secondary structure							S	S	S			S	S	.						.	T	T	S					T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T						S	T	T		B					G	.	.	.	.
Template Predicted Secondary structure														.						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.																				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	Q	L	M	D	G	L	N	T	F	Y	Q	Q	S	L	Q	Q	P	V	A	T	S	A	R	Q	Y	L	E	K	R	G	L	S	H	E	V	I	A	R	F	A	I	G	F	A	P	P	G	W	D	N	V	L	K	R	F	G	G	N	P	E	N	R	Q	S	L	I	D	A	G	M	L	V	T	N	D	Q	G	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	S	N	G	R	Y	S	A	L	T	A	R	G	I	S	K	E	T	C	Q	K	A	G	Y	W	I	A	K	V	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T		B				B	G	G	G	T	B									T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	D	R	F	R	E	R	V	M	F	P	I	R	D	K	R	G	R	V	I	G	F	G	G	R	V	L	G	N	D	T	P	K	Y	L	N	S	P	E	T	D	I	F	H	K	G	R	Q	L	Y	G	L	Y	E	A	Q	Q	D	N	A	E	P	N	R	L	L	V	V	E	G	Y	M	D	V	V	A	L	A	Q
Query Conservation
Alig confidence		.	.	.	.	.																									.											.	.	.	.	.	.										.	.	.	.
Template Conservation		.	.	.	.	.																									.											.	.	.	.	.	.										.	.	.	.
Template Sequence		.	.	.	.	.	V	M	Y	Q	V	A	D	Y	R	D	Q	N	G	N	I	V	S	Q	K	V	R	D	K	D	.	K	N	F	K	T	T	G	S	H	K	.	.	.	.	.	.	S	D	A	L	F	G	K	H	L	.	.	.	.	W	N	G	G	K	K	I	V	V	T	E	G	E	I	D	M	L	T	V	M	E
Template Known Secondary structure		.	.	.	.	.											T	T	S										T	T	.											.	.	.	.	.	.	T	T			T	T	G	G	G	.	.	.	.				B	S						S	S
Template Predicted Secondary structure		.	.	.	.	.																									.											.	.	.	.	.	.										.	.	.	.
Template SS confidence
							104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		276	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																				.	.	.
Query SS confidence							.	.	.																				.	.	.
Query Sequence		Y	G	I	N	Y	.	.	.	A	V	A	S	L	G	T	S	T	T	A	D	H	I	Q	L	L	F	R	.	.	.	A	T	N	N	V	I	C	C	Y	D	G	D	R	A	G	R	D	A	A	W	R	A	L	E	T	A	L	P	Y	M	T	D	G	R	Q	L	R	F	M	F	L	P	D	G	E	D	P	D	T	L
Query Conservation							.	.	.																				.	.	.
Alig confidence							.	.	.																				.	.	.																											.	.	.	.	.												.
Template Conservation																																																										.	.	.	.	.												.
Template Sequence		L	Q	D	C	K	Y	P	V	V	S	L	G	H	G	A	S	A	A	K	K	T	C	A	A	N	Y	E	Y	F	D	Q	F	E	Q	I	I	L	M	F	D	M	D	E	A	G	R	K	A	V	E	E	A	A	Q	V	L	.	.	.	.	.	P	A	G	K	V	R	V	A	V	L	P	.	C	K	D	A	N	E	C
Template Known Secondary structure				T	T		S						T	T	T	T	T	T								T					T	T	B	S								S	S														S	.	.	.	.	.		T	T	T							S	.	S	S	S
Template Predicted Secondary structure																																																										.	.	.	.	.												.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.						.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.
		350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	K	E	G	K	E	A	F	E	A	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	N	G	H	D	R	E	I	M	E	Q	V
Template Known Secondary structure			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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