Job Description P75974 Confidence 100.00% Date Thu Jan 5 12:16:42 GMT 2012 Rank 1 Aligned Residues 207 % Identity 25% Template c3bdnB_ PDB info PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor Resolution 3.91 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.
Predicted Secondary structure																		.																																																										.	.
Query SS confidence																		.																																																										.	.
Query Sequence		H	D	I	R	R	S	N	A	R	K	L	R	D	G	V	G	.	G	N	S	S	F	A	T	M	I	D	R	E	P	T	Q	T	S	R	F	M	G	D	G	A	T	K	N	I	G	D	S	M	A	R	H	I	E	K	C	F	D	L	P	V	G	W	L	D	Q	E	H	Q	T	T	N	I	T	.	.	K	K	P	D
Query Conservation																		.																																																										.	.
Alig confidence																		.																													.	.																												.	.
Template Conservation																																															.	.
Template Sequence		A	R	R	L	K	A	I	Y	E	K	K	K	N	E	L	G	L	S	Q	E	S	V	A	D	K	M	G	M	G	Q	S	G	V	G	A	L	F	N	G	I	N	A	L	N	A	.	.	Y	N	A	A	L	L	A	K	I	L	K	V	S	V	E	E	F	S	P	S	I	A	R	E	I	Y	E	M	Y	E	A	V	S
Template Known Secondary structure																										T	T	T	S		S	S	S	T						T	S	S					.	.										T	T	S		S	T	T	T														T	S	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.
Query Sequence		V	S	I	T	N	K	Q	I	T	L	V	P	V	I	S	W	V	Q	A	G	A	W	K	E	V	G	Y	S	E	V	D	L	S	T	A	E	T	Y	P	C	P	V	P	C	G	E	M	T	Y	I	L	R	V	I	G	D	S	M	.	.	.	.	.	.	I	D	E	Y	R	P	G	D	M	I	F	V	D	P	E	V
Query Conservation																																																												.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.
Template Conservation
Template Sequence		M	Q	P	S	L	R	S	E	Y	E	Y	P	V	F	S	H	V	Q	A	G	M	F	S	P	E	L	R	T	F	T	K	G	D	A	E	R	W	V	S	T	T	K	K	A	S	D	S	A	F	W	L	E	V	E	G	N	S	M	T	A	P	T	G	S	K	P	S	F	P	D	G	M	L	I	L	V	D	P	E	Q
Template Known Secondary structure								S								S	S	S			S		S	S	S				T	T		S									S	S					T	T								S		S	S			S	S	S	S	S					T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	C	H	G	D	D	V	I	A	L	M	H	D	T	G	E	T	T	F	K	R	L	I	E	D	G	T	Q	R	Y	L	K	A	L	N	P	N	W	P	E	P	Y	I	K	I	N	G	N	C	S	I	I	G	T	V	I	F	S	G	K	P	R
Query Conservation
Alig confidence																	.																											.	.	.	.
Template Conservation																	.																											.	.	.	.
Template Sequence		A	V	E	P	G	D	F	C	I	A	R	L	G	G	D	.	E	F	T	F	K	K	L	I	R	G	S	G	Q	V	F	L	Q	P	L	N	P	Q	Y	P	M	I	.	.	.	.	P	E	S	C	S	V	V	G	K	V	I	A	S	Q	W	P	E
Template Known Secondary structure					T	T								T	T	T	.										S	S	S	S						S		S	S	S			B	.	.	.	.																	S
Template Predicted Secondary structure																	.																											.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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