Job Description P75974 Confidence 99.94% Date Thu Jan 5 12:16:42 GMT 2012 Rank 4 Aligned Residues 176 % Identity 13% Template c2fjrB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 Resolution 1.95 Å

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		9	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		R	S	N	A	R	K	L	R	D	G	V	G	.	.	G	N	S	S	F	A	T	M	I	D	R	E	P	T	Q	T	S	R	F	M	G	D	G	A	T	K	N	I	G	D	S	M	A	R	H	I	E	K	C	F	D	L	P	V	G	W	L	D	Q	E	H	Q	T	T	N	I	T	K	K	P	D	V	S	I	T	N
Query Conservation														.	.
Alig confidence														.	.																												.	.	.																															.	.	.	.	.
Template Conservation																																											.	.	.																															.	.	.	.	.
Template Sequence		V	D	V	L	D	R	I	C	E	A	Y	G	F	S	Q	K	I	Q	L	A	N	H	F	D	I	A	S	S	S	L	S	N	R	Y	T	R	G	A	I	S	Y	.	.	.	D	F	A	A	H	C	A	L	E	T	G	A	N	L	Q	W	L	L	T	G	E	G	E	A	F	V	N	N	R	E	.	.	.	.	.	S
Template Known Secondary structure													T		S		T					T	T	T	T												S	S	S				.	.	.																			S		S	S		S			T	T	T	T	.	.	.	.	.	S
Template Predicted Secondary structure																																											.	.	.																															.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	I	T	L	V	P	V	I	S	W	V	Q	A	G	A	W	K	E	V	G	Y	S	E	V	D	L	S	T	A	E	T	Y	P	C	P	V	P	C	G	E	M	T	Y	I	L	R	V	I	G	D	S	M	I	D	E	Y	R	P	G	D	M	I	F	V	D	P	E	V	P	A	C	H	G	D	D	V	I	A	L
Query Conservation
Alig confidence											.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	A	K	R	I	E	G	F	.	T	L	S	E	E	I	L	K	S	D	K	Q	L	S	V	D	A	Q	F	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	L	T	D	G	M	A	I	R	S	E	G	K	I	Y	F	V	D	K	Q	A	S	L	S	D	G	L	W	L	V	D
Template Known Secondary structure		S	S								.				T	T												G	G	G		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			T	T							T	T							T	T			S		S
Template Predicted Secondary structure											.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		M	H	D	T	G	E	T	T	F	K	R	L	I	E	D	.	G	T	Q	R	Y	L	K	A	L	N	P	N	W	P	E	P	Y	I	K	I	N	G	N	C	S	I	I	G	T	V	I	F	S	G	K
Query Conservation																	.
Alig confidence			.	.													.															.	.	.	.
Template Conservation			.	.																												.	.	.	.
Template Sequence		I	.	.	K	G	A	I	S	I	R	E	L	T	K	L	P	G	R	K	L	H	V	A	G	G	K	V	P	F	E	.	.	.	.	C	G	I	D	D	I	K	T	L	G	R	V	V	G	V	Y	S
Template Known Secondary structure			.	.	T	T											T	T	T						S	S	S	S				.	.	.	.			T	T	S	S
Template Predicted Secondary structure			.	.																												.	.	.	.
Template SS confidence
		145			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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