Job Description P75974 Confidence 99.38% Date Thu Jan 5 12:16:42 GMT 2012 Rank 9 Aligned Residues 159 % Identity 13% Template c1y9qA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		T	I	H	D	I	R	R	S	N	A	R	K	L	R	D	G	V	G	.	G	N	S	S	F	A	T	M	I	D	R	E	P	T	Q	T	S	R	F	M	G	D	G	A	T	K	N	I	G	D	S	M	A	R	H	I	E	K	C	F	D	L	P	V	G	W	L	D	Q	E	H	Q	T	T	N	I	T	K	K	P	D
Query Conservation																				.
Alig confidence																				.																													.	.
Template Conservation																																																	.	.
Template Sequence		X	F	K	S	Q	I	A	N	Q	L	K	N	L	R	K	S	R	G	L	S	L	D	A	T	A	Q	L	T	G	V	S	K	A	X	L	G	Q	I	E	R	G	E	S	S	P	T	I	.	.	A	T	L	W	K	I	A	S	G	L	E	A	S	F	S	A	F	F	A	N	D	P	Q	L	L	S	S	E	R	S	F
Template Known Secondary structure																		T	T											S	S										T	T		S					.	.											T			S	G	G	G	G	T	T	S	T								B
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.
Query Sequence		V	S	I	T	N	K	Q	I	T	L	V	P	V	I	S	W	V	Q	A	G	A	W	K	E	V	G	Y	S	E	V	D	L	S	T	A	E	T	Y	P	C	P	V	P	C	G	E	M	T	Y	I	L	R	V	I	G	D	S	M	I	D	.	.	.	.	.	.	E	Y	R	P	G	D	M	I	F	V	D	P	E	V
Query Conservation																																																														.	.	.	.	.	.
Alig confidence													.	.	.	.																																														.	.	.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		P	D	D	L	N	X	K	I	H	T	L	.	.	.	.	F	P	Y	A	A	D	T	G	L	E	I	F	E	I	T	L	L	D	H	H	Q	Q	X	S	S	P	H	A	L	G	V	I	E	Y	I	H	V	L	E	G	I	X	K	V	F	F	D	E	Q	W	H	E	L	Q	Q	G	E	H	I	R	F	F	S	D	Q
Template Known Secondary structure		T	T		T	T							.	.	.	.					T	T	T	T										T	T									S	T	T										S							T	T							T	T								S	S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		156	.				.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		P	A	.	.	.	C	H	G	D	D	V	I	A	L	M
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		P	H	G	Y	A	A	V	T	E	K	A	V	F	Q	N
Template Known Secondary structure		S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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