Return to main results Retrieve Phyre Job Id

Job DescriptionP71241
Confidence56.56%DateThu Jan 5 12:12:36 GMT 2012
Rank318Aligned Residues91
% Identity14%Templatec3pefA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:6-phosphogluconate dehydrogenase, nad-binding; PDBTitle: crystal structure of gamma-hydroxybutyrate dehydrogenase from2 geobacter metallireducens in complex with nadp+
Resolution2.07 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   144.....150.........160.........170.........180.... .....190........
Predicted Secondary structure 
















.....





....................
Query SS confidence 








































. . . . .













. . . . . . . . . . . . . . . . . . . .
Query Sequence  KRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDPKPGG. . . . . VSNDWAGNLQQLVE. . . . . . . . . . . . . . . . . . . .
Query Conservation    







     
   
         


 


     .....    


    
  ....................
Alig confidence 






















...






.






.....













....................
Template Conservation   






 
 

  

  
   ...
  
   .
        
   
       
           
            
Template Sequence  SQKFGFIGLGIMGSAMAKNLVKA. . . GCSVTIW. NRSPEKAEELAALGAERAATPEVVESCPVTFAMLADPAAAEEVCFG
Template Known Secondary structure 



ST...T
.
SSGGGGTT

S



S

SSS
Template Predicted Secondary structure 





...

.














Template SS confidence 















































































   1........10.........20... ......30 .........40.........50.........60.........70......
 
   199200.........210.........220.........230........
Predicted Secondary structure  ...













Query SS confidence  . . .







































Query Sequence  . . . DAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIP
Query Conservation  ... 
    

 



 
         

  
   

 
  

Alig confidence  ...







































Template Conservation                
  

                        
Template Sequence  KHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAP
Template Known Secondary structure  TT


TT

S


TT


Template Predicted Secondary structure 




















Template SS confidence 










































   78.80.........90.........100.........110.........120
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions