 |
Job Description | P71241 | Confidence | 93.80% | Date | Thu Jan 5 12:12:36 GMT 2012 |
Rank | 80 | Aligned Residues | 107 |
% Identity | 12% | Template | c3ndjA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:methyltransferase; |
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
|
Resolution | 1.50 Å |
|
 |
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|  |  |
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | R | S | C | I | R | I | G | A | G | W | L | R | N | H | G | Y | N | K | R | M | V | A | V | A | G | D | L | A | A | G | Q | M | L | M | E | S | F | R | N | Q | P | W | L | G | F | E | V | V | G | V | Y | H | D | P | K | P | G | G | V | . |
. |
. |
. |
. |
. |
S | N | D | W | A | G | N | L | Q | Q | L | V | E | D |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |
|
|
|   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   | . | . | . |   |
|   |   |   |
|
|   |
|
|   |
|   |
|   |   |   |
|
|   |   |
|
|
|   |   |
| . | . | . | . | . |   |   |
Template Sequence |   |
V | V | K | I | R | D | E | L | T | A | L | L | H | R | L | R | A | E | G | R | S | V | V | G | Y | G | A | T | A | K | S | A | T | V | T | N | F | C | G | I | G | P | D | . |
. |
. |
L | V | H | S | V | Y | D | T | T | P | D | K | Q | N | R | L | T | P | G | A | H | I | P | V | R | P | A | . |
. |
. |
. |
. |
S | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
|
|
| S | T |  |  |  |  |  |  |  |  | T |
|
| T | T | . | . | . | T | S |
|
|  |  |  | S |
| G | G | G | T | T |  |  |
| T | T | T |
|
|  |  |  |  | G | . | . | . | . | . | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . |
|  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
299 | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | |
|
|
. | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 370 |
  |
  |   |
200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | A | G | K | I | H | N | V | Y | I | A | M | Q | M | C | D | G | A | R | V | K | K | L | V | H | Q | L | A | D | T | T | C | S | V | L | L | I | P | D | V |
Query Conservation |   |
|   |   |   |   |
|
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |
Template Sequence |   |
F | S | D | P | Y | P | D | Y | A | L | L | F | A | W | N | H | A | E | E | I | M | A | K | E | Q | E | F | H | Q | A | G | G | R | W | I | L | Y | V | P | E | V |
Template Known Secondary structure |   |
|
| S | S |
|
| S |  |  |  |  | S |
| G | G | G |  |  |  |  |  |  |  |
|  |  |  |  |  | T | T |
|  |  |  |  |
| S | S | S |
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
371 | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|