Job Description P71241 Confidence 68.07% Date Thu Jan 5 12:12:36 GMT 2012 Rank 233 Aligned Residues 83 % Identity 18% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.										.	.	.
Query SS confidence																																						.	.	.	.	.										.	.	.
Query Sequence		M	V	A	V	A	G	D	L	A	A	G	Q	M	L	M	E	S	F	R	N	Q	P	W	L	G	F	E	V	V	G	V	Y	H	D	P	K	.	.	.	.	.	P	G	G	V	S	N	D	W	A	.	.	.	G	N	L	Q	Q	L	V	E	D	A	K	A	G	K	I	H	N	V	Y	I	A	M	Q	M	C	D	G
Query Conservation																																						.	.	.	.	.										.	.	.
Alig confidence																							.	.	.													.	.	.	.	.										.	.	.																								.
Template Conservation																							.	.	.																																																					.
Template Sequence		K	V	I	I	I	G	G	E	T	T	A	Y	Y	L	A	R	S	M	L	S	R	.	.	.	K	Y	G	V	V	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V	I	L	T	P	.	R	D	E
Template Known Secondary structure																						T	.	.	.	T								S												S	S	S					S		T	T	S								T			T	T								S	.
Template Predicted Secondary structure																							.	.	.																																																					.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	V	K	K	L	V	H	Q	L	A	D	T	T	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	L	F	I	A	Q	L	V	M	K	D	F	G	V
Template Known Secondary structure													T	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions