Job Description Q9JMS5 Confidence 15.71% Date Wed Jan 25 15:21:16 GMT 2012 Rank 42 Aligned Residues 195 % Identity 14% Template d2mpra_ SCOP info Transmembrane beta-barrels Porins Maltoporin-like Resolution 2.40

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		1491	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	S	Y	S	L	N	T	M	M	I	G	G	D	I	Y	N	W	T	D	G	Y	N	Y	S	H	I	G	I	M	G	G	M	G	S	A	A	N	K	T	T	S	T	N	N	K	R	A	T	G	N	V	D	G	Y	T	L	G	L	Y	H	V	F	Q	Q	N	I	S	D	G	L	N	E	S	E	R	Q	G	L	W
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.																										.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.																										.	.															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	D	V	R	L	A	G	L	Q	T	N	P	D	.	.	.	.	.	.	.	.	.	.	G	V	L	E	L	G	V	D	Y	G	R	A	N	T	T	D	G	Y	K	L	A	D	G	A	S	.	.	K	D	G	W	M	F	T	A	E	H	T	Q	S	M	.	.	.	.	.	.	.	.	.	.	.	L	K	G	Y
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	.	.	.																T	T		B			T	T			.	.															.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																										.	.															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.												.	.	.	.
		1571	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.									.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.
Query Sequence		T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	.	.	.	.	.	.	.	.	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L	Q	G
Query Conservation																																			.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.											.	.
Template Conservation																																																					.	.
Template Sequence		N	K	F	V	V	Q	Y	A	T	D	A	M	T	T	Q	G	K	G	Q	A	R	G	S	D	G	S	S	S	F	T	E	K	I	N	Y	A	N	K	V	I	N	N	N	G	N	M	W	R	I	L	D	.	.	H	G	A	I	S	L	G	D	K	W	D	L	M	Y	V	G	M	Y	Q	N	I	D	W	D	N	N	L
Template Known Secondary structure											G	G	G	T	T	T		S	S				T	T	T	T																											.	.							T	T	T															T	T	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		1643	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	G	G	Y	S	F	K	T	G	N	Y	S	R	T	N	F	D	S	D	M	V	E	Y	N	T	S	D	N	F	A	L	K	S
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																				.	.	.
Template Conservation								.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																				.	.	.
Template Sequence		G	T	E	W	W	T	.	.	.	.	.	.	.	.	V	G	V	R	P	M	Y	K	W	T	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	T	L	L	E	V	G	Y	.	D	N	V	K	S	Q	Q	T	G	D	R	N	N	Q	Y	K	I	T	L	.	.	.	A	Q	Q	W	Q	A
Template Known Secondary structure								.	.	.	.	.	.	.	.											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.						T	T	T												.	.	.						S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																				.	.	.
Template SS confidence
		312	.	.	.	.	.									.	.	320	.	.	.	.	.	.	.	.	.																	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.				.	.	360	.	.	.
		1723	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	F	E	F	L	K	D	A	R	L	L	L	T	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	S	I	W	S	R	P	A	I	R	I	F	A	T	Y
Template Known Secondary structure		S	S	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions