Job Description Q9JMS5 Confidence 98.02% Date Wed Jan 25 15:21:16 GMT 2012 Rank 15 Aligned Residues 136 % Identity 16% Template d1qjpa_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution 1.65

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1563	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	E	R	Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L	Q	G
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.			.	.	.																.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.			.	.	.																.	.	.	.
Template Sequence		A	P	K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	L	G	A	G	A	F	G	G	Y	Q	V	N	P	.	.	.	.	.	.	.	Y	V	.	.	.	G	F	E	M	G	Y	D	W	L	G	R	M	P	Y	A	.	.	.	.
Template Known Secondary structure					T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	.	.	.	.	.	.	.	T		.	.	.																.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.			.	.	.																.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.																20	.	.	.	.	.	.	.	.	.	30	.	.	.	.								.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		1643	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	G	G	Y	S	F	K	T	G	N	Y	S	R	T	N	F	D	S	D	M	V	E	Y	N	T	S	D	N	F	A	L	K	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	.	.	.	.	.	.	.	.	.	.	.	.	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	Y	S	N	V	Y	G	K	N	H	D	T	G	V	.	.	.	S	P	V	F	A	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.																S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.																			S	S	S									.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template SS confidence
													72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90													.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.
		1723	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	F	E	F	L	K	D	A	R	L	L	L	T	S	S	Y	S	I	N	N	D	R	N	L	S	F	I	L	G	G	N	Y	Y	F
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		G	V	E	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	W	.	.	.	.	.	T	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure									T	T										.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions