Job Description Q9JMS5 Confidence 98.09% Date Wed Jan 25 15:21:16 GMT 2012 Rank 14 Aligned Residues 148 % Identity 17% Template d1p4ta_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution 2.55

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		1564	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	R	Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L	Q	G	G
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		E	G	A	S	G	F	Y	V	Q	A	D	A	A	H	A	K	A	S	S	S	L	G	.	.	.	.	.	.	.	.	.	S	A	K	G	F	S	P	R	I	S	A	G	Y	R	I	N	D	.	.	.	.	.	.	.	L	R	F	A	V	D	Y	T	R	Y	K	N	Y	K	A	P	S	.	.	.	.	.	.	.	.
Template Known Secondary structure																					S	S		.	.	.	.	.	.	.	.	.																T	T	.	.	.	.	.	.	.													S	S			S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		1644	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	G	G	Y	S	F	K	T	G	N	Y	S	R	T	N	F	D	S	D	M	V	E	Y	N	T	S	D	N	F	A	L	K	S	G
Query Conservation
Alig confidence		.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation		.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence		.	.	.	.	.	.	T	D	F	K	L	Y	S	I	G	A	S	A	I	Y	D	F	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	P	V	K	P	Y	L	G	A	R	L	S	L	N	R	A	S	V	D	L	G	G	S	D	S	F	S	Q	T	S	I	.	.	.	G	L	G	V	L	T	G
Template Known Secondary structure		.	.	.	.	.	.	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S																			T	T										.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
								57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.															.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.
		1724	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.								.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.
Query Sequence		V	E	F	E	F	L	K	D	A	R	L	L	L	T	S	S	Y	S	I	.	.	.	.	.	.	.	N	N	D	R	N	L	S	F	I	L	G	G	N	Y	Y	F
Query Conservation																					.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	Y	A	V	T	P	N	V	D	L	D	A	G	Y	R	Y	N	Y	I	G	K	V	N	T	V	K	N	V	R	S	G	E	L	S	A	G	V	R	V	K	F
Template Known Secondary structure								T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions