Job Description Q9JMS5 Confidence 99.91% Date Wed Jan 25 15:21:16 GMT 2012 Rank 7 Aligned Residues 518 % Identity 12% Template d1daba_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Virulence factor P.69 pertactin Resolution 2.50

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		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.			.	.	.	970	.	.	.	.	.	.	.	.	.	980	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		G	Y	I	G	V	G	E	K	S	H	T	L	L	K	L	D	N	S	T	F	H	A	A	G	N	I	D	I	G	K	G	S	S	T	I	A	N	V	S	V	G	A	G	S	N	M	S	I	K	G	N	A	S	I	G	V	G	D	Q	A	K	A	K	.	.	F	S	V	K	D	S	V	L	N	I	G	S	S	L	V
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		G	I	H	I	Q	G	S	D	P	G	G	V	R	T	A	S	G	T	T	I	K	V	S	G	R	Q	A	Q	G	I	L	L	E	N	P	A	A	E	L	Q	F	R	N	G	S	V	T	S	S	G	Q	L	S	D	D	G	I	R	R	F	L	G	T	V	T	V	K	A	G	K	L	V	A	D	H	A	T	L	A	N
Template Known Secondary structure		S					T	T	S									S							S	T	T			S														S							S			B		S	S	S	S		B			S												S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		982	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	Q	G	N	S	T	E	A	E	M	S	V	E	H	S	Q	L	Y	S	G	G	L	L	L	G	T	A	N	N	A	V	V	S	M	S	A	N	N	S	E	I	S	V	V	G	D	Y	T	V	A	K	G	D	G	S	E	A	T	L	I	Y	K	N	S	D	I	N	L	G	N	G	I	L	G	A	G	S	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	D	T	W	D	D	D	G	I	A	L	Y	V	A	G	E	Q	A	Q	A	S	I	A	D	S	T	L	Q	G	A	G	G	V	Q	I	E	R	G	A	N	V	T	V	Q	R	S	A	I	V	D	G	G	L	H	I	G	A	L	Q	S	L	Q	P	E	D	L	P	P	S	R	V	V	L	R	D	T	N	V	T
Template Known Secondary structure			S		T	T	T	S									S	T	T							S					S	T	T						T	T							S					S	B							S	S			S				S									S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		1062	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	D	L	S	L	D	N	S	K	F	V	A	S	D	G	I	I	I	G	K	G	D	N	A	I	T	N	L	S	I	S	D	H	S	V	F	K	G	E	R	I	N	I	G	N	G	S	Y	S	K	N	S	I	S	I	T	G	N	S	I	F	D	F	G	S	S	Q	E	S	T	I	G	E	G	D	Y	S	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	P	A	S	G	A	P	A	A	V	S	V	L	G	A	S	E	L	T	L	D	G	G	H	I	T	G	G	R	A	A	G	V	A	A	M	Q	G	A	V	V	H	L	Q	R	A	T	I	R	R	G	D	A	L	A	G	G	A	V	P	G	G	A	V	P	G	G	A	V	P	G	G	F	G	P	G	G	F	G
Template Known Secondary structure				T	T	S			S							S	S														S	S							S	S												S						S	S	S	S	S		S	S			S					S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		1142	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	T	I	N	D	A	S	V	Y	G	D	G	S	L	T	L	A	K	G	N	N	S	F	A	V	L	N	L	Q	D	N	A	V	T	N	A	N	N	I	S	L	A	T	G	L	G	S	K	A	I	V	N	V	S	N	M	N	S	G	Q	F	N	P	V	S	M	G	A	G	D	G	Y	A	E	V	N	F	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	L	D	G	W	Y	G	V	D	V	S	G	S	S	V	E	L	A	Q	S	I	V	E	A	P	E	L	G	A	A	I	R	V	G	R	G	A	R	V	T	V	P	G	G	S	L	S	A	P	H	G	N	V	I	E	T	G	G	A	R	R	F	A	P	Q	A	A	P	L	S	I	T	L	Q	A	G	A	H	A
Template Known Secondary structure			S	S		S								S	S						S							S	S								T	T							S	S																S	S			S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	Y	T	L	S	T	N	F	I	C	M	D	S	G	S	C	A	D	T	V	I	N	V	N	R	G	T	V	S	L	S	G	T	N	D	W	K	G	Q	I	N	V	Y	D	G	T	R	L	D	A	R	G	N	D	A	V	D	G	I	L	N	V	S	K	E	A	Q	V	D	F	N	G	Y	S	Q	H	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	K	A	L	L	Y	R	V	L	P	E	P	V	K	L	T	L	T	G	G	A	D	A	Q	G	D	I	V	A	T	E	L	P	S	I	P	G	T	S	I	G	P	L	D	V	A	L	A	S	Q	A	R	W	T	G	A	T	R	A	V	D	S	L	S	I	D	N	A	T	W	V	M	T	D	N	S	N	V	G
Template Known Secondary structure											S	S									T	T											S		S	S	S		G	G	G	S									T	T							B	S									S							S
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		1302	.	.			.	.	.	.	.	1310	.	.	.		.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.										.
Query SS confidence					.	.										.
Query Sequence		G	I	D	.	.	N	K	G	M	I	Y	L	S	D	.	G	S	A	S	S	D	V	Y	L	D	K	D	Y	V	A	H	D	G	S	G	V	Q	F	G	I	F	G	Q	K	E	A	D	V	M	H	V	K	G	D	T	S	G	S	S	G	I	V	V	T	T	N	S	K	N	K	I	K	K	G	G	D	I	L	L	V
Query Conservation					.	.										.
Alig confidence					.	.										.																																																									.
Template Conservation																																																																									.
Template Sequence		A	L	R	L	A	S	D	G	S	V	D	F	Q	Q	P	A	E	A	G	R	F	K	V	L	T	V	N	T	L	A	G	S	G	L	F	R	M	N	V	F	A	D	L	G	L	S	D	K	L	V	V	M	Q	D	A	S	G	Q	H	R	L	W	V	R	N	S	G	S	E	P	A	.	S	A	N	T	L	L	L	V
Template Known Secondary structure							T	T									S	S	T	T																						G	G	G	T													S										S				S	.	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.
		1379	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.		1420	.	.	.	.	.	.	.	.	.	1430	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		E	V	N	G	D	S	S	G	S	F	Y	L	N	S	L	I	K	N	G	K	E	Y	K	V	T	G	D	Y	I	D	V	G	A	W	E	Y	A	L	N	K	K	.	R	K	N	W	Y	L	S	V	D	M	R	P	E
Query Conservation																																											.
Alig confidence															.	.	.	.	.	.	.	.	.	.																			.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	P	L	G	S	A	A	T	F	T	L	A	.	.	.	.	.	.	.	.	.	.	N	K	D	G	K	V	D	I	G	T	Y	R	Y	R	L	A	A	N	G	N	G	Q	W	S	L	V	G	A	K	A	P	P
Template Known Secondary structure					S	S									.	.	.	.	.	.	.	.	.	.	S	G	G	G					T	T									S	S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.											.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.