Job Description Q9JMS5 Confidence 99.61% Date Wed Jan 25 15:21:16 GMT 2012 Rank 10 Aligned Residues 661 % Identity 11% Template c3syjA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Resolution 2.20 Å

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		754	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	F	T	V	A	R	G	N	N	A	S	A	T	L	D	Y	S	D	S	K	I	N	I	G	N	G	Y	I	G	G	G	E	K	A	Q	T	V	L	T	L	K	D	S	A	L	A	A	T	G	D	V	I	M	G	Q	G	Q	E	T	Q	T	D	L	T	L	S	P	Q	S	S	I	K	V	S	G	N	M	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	T	S	L	Y	T	R	A	G	N	G	V	Y	T	I	S	G	N	D	N	G	Q	G	S	I	T	Q	K	S	G	I	P	S	E	I	K	I	T	L	A	N	M	S	L	P	L	K	E	K	D	K	V	H	N	P	R	Y	D	G	P	N	I	Y	S	P	R	L	N	N	G	E	T	L	Y	F	M	D	Q	K	Q
Template Known Secondary structure								T	T	S										T									S	S	S	S	S	S									T	T	S		S	S							S	G	G	G		S										T									S	S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		834	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	G	N	A	A	S	A	K	V	I	V	D	N	A	D	L	S	A	N	S	M	S	I	G	E	G	D	T	A	A	V	T	M	T	G	N	G	A	T	I	S	S	G	N	T	F	T	V	A	R	G	N	N	A	S	A	T	L	D	Y	S	D	S	K	I	N	I	G	N	G	Y	I	G	V	G	E	K	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	L	I	F	A	S	D	I	N	Q	G	A	G	G	L	Y	F	E	G	N	F	T	V	S	P	N	S	N	Q	T	W	Q	G	A	G	I	H	V	S	E	N	S	T	V	T	W	K	V	N	G	V	E	H	D	R	L	S	K	I	G	K	G	T	L	H	V	Q	A	K	G	E	N	K	G	S	I	S	V	G
Template Known Secondary structure							S	S					T	T							S							S	S	S		B			S	S						T	T								B			T	T							S	S	S							B	S	B
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		914	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	K	L	D	N	S	T	F	H	A	A	G	N	I	D	I	G	K	G	S	S	T	I	A	N	V	S	V	G	A	G	S	N	M	S	I	K	G	N	A	S	I	G	V	G	D	Q	A	K	A	K	F	S	V	K	D	S	V	L	N	I	G	S	S	L	V	L	G	Q	G	N	S	T	E	A	E	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	K	V	I	L	E	Q	Q	A	D	D	Q	G	N	K	Q	A	F	S	E	I	G	L	V	S	G	R	G	T	V	Q	L	N	D	D	K	Q	F	D	T	D	K	F	Y	F	G	F	R	G	G	R	L	D	L	N	G	H	S	L	T	F	K	R	I	Q	N	T	D	E	G	A	M	I	V	N	H	N	T	T
Template Known Secondary structure										B			T	T				B	S		S														S	S	S	S		S		G	G	G					T	T							T	T						S	S					S	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
		994	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	H	S	Q	L	Y	S	G	G	L	L	L	G	T	A	N	N	A	V	V	S	M	S	A	N	N	S	E	I	S	V	V	G	D	Y	T	V	A	K	G	D	G	S	E	A	T	L	I	Y	K	N	S	D	I	N	L	G	N	G	I	L	G	A	G	S	G	V	K	T	D	L	S	L	D	N	S	K	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	A	N	V	T	I	T	G	N	E	S	I	V	L	P	N	G	N	N	I	N	K	L	D	Y	R	K	E	I	A	Y	N	G	W	F	G	E	T	D	K	N	K	H	N	G	R	L	N	L	I	Y	K	P	T	T	E	D	R	T	L	L	L	S	G	G	T	N	L	K	G	D	I	T	Q	T	K	G	K	L
Template Known Secondary structure		S										S			S				S	S				G	G	G	G		S						S			S				T	T	S												S	S	S	S							S					S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		1074	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	D	G	I	I	I	G	K	G	D	N	A	I	T	N	L	S	I	S	D	H	S	V	F	K	G	E	R	I	N	I	G	N	G	S	Y	S	K	N	S	I	S	I	T	G	N	S	I	F	D	F	G	S	S	Q	E	S	T	I	G	E	G	D	Y	S	Q	S	L	V	T	I	N	D	A	S	V	Y	G	D
Query Conservation
Alig confidence																																						.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		F	F	S	G	R	P	T	P	H	A	Y	N	H	L	N	K	R	W	S	E	M	E	G	I	P	Q	G	E	I	V	W	D	H	D	W	I	.	.	.	.	N	R	T	F	K	A	E	N	F	Q	I	K	G	G	S	A	V	V	S	R	N	V	S	S	I	E	G	N	W	T	V	S	N	N	A	N	A	T	F	G
Template Known Secondary structure													B											T			S	B					T	T				.	.	.	.													S	S						S	S												T	T
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.					.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
		1154	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	L	T	L	A	K	G	N	N	S	F	A	V	L	N	L	Q	D	N	A	V	T	N	A	N	N	I	S	L	A	T	G	L	G	S	K	A	I	V	N	V	S	N	M	N	S	G	Q	F	N	P	V	S	M	G	A	G	D	G	Y	A	E	V	N	F	D	G	V	N	G	Y	T	L	S	T	N	F	I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	P	N	Q	Q	N	T	I	C	T	R	S	D	W	T	G	L	T	T	C	Q	K	V	D	L	T	D	T	K	V	I	N	S	I	P	K	T	Q	I	N	G	S	I	N	L	T	D	N	A	T	A	N	V	K	G	L	A	K	L	N	G	N	V	T	L	T	N	H	S	Q	F	T	L	S	N	N	A	T	Q
Template Known Secondary structure				T	T	S									T	T	T																			S							S						T	T							S	S					S						T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
		1234	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	S	G	S	C	A	D	T	V	I	N	V	N	R	G	T	V	S	L	S	G	T	N	D	W	K	G	Q	I	N	V	Y	D	G	T	R	L	D	A	R	G	N	D	A	V	D	G	I	L	N	V	S	K	E	A	Q	V	D	F	N	G	Y	S	Q	H	M	T	G	I	D	N	K	G	M	I	Y	L	S	D
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		I	G	N	I	R	L	S	D	N	S	T	A	T	V	D	N	A	.	N	L	N	G	N	V	H	L	T	D	S	A	Q	F	S	L	K	N	S	H	F	S	H	Q	I	Q	G	D	K	G	T	T	V	T	L	E	N	A	T	W	T	M	P	S	D	T	T	L	Q	N	L	T	L	N	N	S	T	I	T	L	N	S
Template Known Secondary structure			S						T	T							S	S	.				S						T	T							S					S						T	T							S							S					S											S		G
Template Predicted Secondary structure																			.
Template SS confidence
		769	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.		.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
		1314	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	A	S	S	D	V	Y	L	D	K	D	Y	V	A	H	D	G	S	G	V	Q	F	G	I	F	G	Q	K	E	A	D	V	M	H	V	K	G	D	T	S	G	S	S	G	I	V	V	T	T	N	S	K	N	K	I	K	K	G	G	D	I	L	L	V	E	V	N	G	D	S	S	G	S	F	Y	L	N	S	L
Query Conservation
Alig confidence																																																										.																					.	.	.
Template Conservation																																																										.																					.	.	.
Template Sequence		A	Y	S	R	F	N	T	L	T	V	N	G	K	L	S	G	Q	G	T	F	Q	F	T	S	S	L	F	G	Y	K	S	D	K	L	K	L	S	N	D	A	E	G	D	Y	I	L	S	V	R	N	T	G	K	E	P	E	.	T	L	E	Q	L	T	L	V	E	S	K	D	N	Q	P	L	S	D	K	L	.	.	.
Template Known Secondary structure		G	G										S														T	T	T	T									T	T													S				S	.	S										S	S	S	S				T	T		.	.	.
Template Predicted Secondary structure																																																										.																					.	.	.
Template SS confidence
		848	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.		.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.
		1394	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	N	G	K	E	Y	K	V	T	G	D	Y	I	D	V	G	A	W	E	Y	A	L	N	K	K	R	K	N	W	Y	L	S	V	D	M	R	P
Query Conservation
Alig confidence		.	.	.	.	.																												.	.	.
Template Conservation		.	.	.	.	.																												.	.	.
Template Sequence		.	.	.	.	.	K	F	T	L	E	N	D	H	V	D	A	G	A	L	R	Y	K	L	V	K	N	D	G	E	F	R	L	.	.	.	H	N	P
Template Known Secondary structure		.	.	.	.	.					T	T	S					T	T									T	T					.	.	.
Template Predicted Secondary structure		.	.	.	.	.																												.	.	.
Template SS confidence
							947	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.				.	.	.