Job Description Q9JMS5 Confidence 100.00% Date Wed Jan 25 15:21:16 GMT 2012 Rank 3 Aligned Residues 243 % Identity 22% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		1468	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	N	G	M	W	I	Q	F	N	N	N	S	G	S	N	S	E	V	Y	D	N	L	K	T	S	Y	S	L	N	T	M	M	I	G	G	D	I	Y	N	W	T	D	G	Y	N	Y	S	H	I	G	I	M	G	G	M	G	S	A	A	N	K	T	T	S	T	N	N	K	R	A	T	G	N	V	D	G	Y	T	L
Query Conservation
Alig confidence																				.	.	.	.	.															.																									.	.	.	.
Template Conservation																				.	.	.	.	.															.																									.	.	.	.
Template Sequence		D	A	G	G	P	W	A	R	T	F	S	E	R	Q	Q	I	S	N	.	.	.	.	.	A	Y	D	Q	T	V	S	G	L	E	I	G	L	D	.	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	.	.	.	.	Y	P	G	D	G	G	G	K	V	K	G	L	H	V
Template Known Secondary structure																				.	.	.	.	.															.						T	T																		.	.	.	.	B	T	T	T	B
Template Predicted Secondary structure																				.	.	.	.	.															.																									.	.	.	.
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.						.	.	.	.	.	.	.	770	.	.	.	.	.	.		.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800					.	.	.	.	.	.	.	.	.	810	.	.	.	.
		1548	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.					.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		G	L	Y	H	V	F	Q	Q	N	I	S	D	G	L	N	E	S	E	R	Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	.	.	.	.	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P
Query Conservation																																						.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																		.	.	.	.																													.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template Sequence		G	G	Y	A	A	Y	V	G	D	.	.	.	.	.	.	.	.	.	.	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	.	.	.	.	P	N	D	W	F	A	E	P
Template Known Secondary structure										S	.	.	.	.	.	.	.	.	.	.	S	S	B																				S	S	S																				B					.	.	.	.	G	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template SS confidence
		819	820	.	.	.	.	.	.	.											.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.					.	.	.	880	.	.	.	.
		1624	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L	Q	G	G	K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	G	G	Y	S	F	K	T	G	N	Y	S	R	T
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	.	.	.	.
Template Known Secondary structure																		S	S	S																										T	T	S			.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		885	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.													.	.	.	.	.	.	940	.	.	.	.	.	.	.	.
		1704	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.			.	.	.	.	1750	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		N	F	D	S	D	M	V	E	Y	N	T	S	D	N	F	A	L	K	S	G	V	E	F	E	F	L	K	D	A	R	L	L	L	T	S	S	Y	S	I	N	N	D	.	.	R	N	L	S	F	I	L	G	G	N	Y	Y	F
Query Conservation																																												.	.
Alig confidence		.	.	.	.	.	.	.	.																																			.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	T	G	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure		.	.	.	.	.	.	.	.				B														G	G	G	B												S	S													B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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