Job Description Q9JMS5 Confidence 99.65% Date Wed Jan 25 15:21:16 GMT 2012 Rank 9 Aligned Residues 229 % Identity 16% Template c3h09B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease Resolution 1.75 Å

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		1186	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	S	K	A	I	V	N	V	S	N	M	N	S	G	Q	F	N	P	V	S	M	G	A	G	D	G	Y	A	E	V	N	F	D	G	V	N	G	Y	T	L	S	T	N	F	I	C	M	D	S	G	S	C	A	D	T	V	I	N	V	N	R	G	T	V	S	L	S	G	T	N	D	W	K	G	Q	I	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	G	R	N	V	A	N	I	T	S	N	I	T	A	S	D	N	A	K	V	H	I	G	Y	K	A	G	D	T	V	C	V	R	S	D	Y	T	G	Y	V	T	C	T	T	D	K	L	S	D	K	A	L	N	S	F	N	A	T	N	V	S	G	N	V	N	L	S	G	N	A	N	F	V	L	G	K	A	N	L
Template Known Secondary structure					T	T												T	T						S	B		T	T								T	T	T								S								T	T	S							S						T	T						S	B
Template Predicted Secondary structure
Template SS confidence
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
		1266	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	G	T	R	L	D	A	R	G	N	D	A	V	D	G	I	L	N	V	S	K	E	A	Q	V	D	F	N	G	Y	S	Q	H	M	T	G	I	D	N	K	G	M	I	Y	L	S	D	G	S	A	S	S	D	V	Y	L	D	K	D	Y	V	A	H	D	G	S	G	V	Q	F	G	I	F	G	Q	K	E	A	D
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		F	G	T	I	S	G	T	G	N	S	Q	V	R	L	T	E	N	S	H	W	H	L	T	G	D	S	N	V	N	Q	L	N	L	D	K	G	H	I	H	L	N	A	Q	N	D	A	N	K	V	T	T	Y	N	T	L	T	V	.	.	N	S	L	S	G	N	G	S	F	Y	Y	L	T	D	L	S	N	K	Q	G	D
Template Known Secondary structure			S						T	T							T	T						S	S																S	S	S				T	T	S										.	.															G	G	G	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		841	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.			.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.
		1346	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	H	V	K	G	D	T	S	G	S	S	G	I	V	V	T	T	N	S	K	N	K	I	K	K	G	G	D	I	L	L	V	E	V	N	G	D	S	S	G	S	F	Y	L	N	S	L	I	K	N	G	K	E	Y	K	V	T	G	D	Y	I	D	V	G	A	W	E	Y	A	L	N	K	K	R	K	N	W	Y	L
Query Conservation
Alig confidence																						.	.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.																						.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	V	V	T	K	S	A	T	G	N	F	T	L	Q	V	A	D	K	T	.	.	G	E	P	T	K	N	E	L	T	L	F	D	A	S	N	A	T	R	N	N	L	.	.	.	.	.	.	.	.	.	.	N	V	S	L	V	G	N	T	V	D	L	G	A	W	K	Y	K	L	R	N	V	N	G	R	Y	D	L
Template Known Secondary structure																				S	S	.	.					S									T	T	S	B		T	T		.	.	.	.	.	.	.	.	.	.									S	S	G	G	G									T	T
Template Predicted Secondary structure																						.	.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		919	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.			.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.											960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.
		1426	.	.	.	1430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	D	M	R	P
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	Y	N	P
Template Known Secondary structure		.	.	.
Template Predicted Secondary structure		.	.	.
Template SS confidence
					987	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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