Job Description Q9JMS5 Confidence 11.20% Date Wed Jan 25 15:21:16 GMT 2012 Rank 48 Aligned Residues 119 % Identity 15% Template c3fbyC_ PDB info PDB header:cell adhesion Chain: C: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein. Resolution 3.15 Å

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		1546	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	G	L	Y	H	V	F	Q	Q	N	I	S	D	G	L	N	E	S	E	R	Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.														.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		Y	A	G	F	I	F	G	Y	Q	D	S	.	.	.	.	.	.	.	.	.	.	S	S	F	Y	V	V	M	W	K	Q	M	E	Q	.	.	.	.	T	Y	W	Q	A	N	P	F	R	A	V	A	E	P	G	I	Q	L	K	A	V	K	S	S	T	G	P	G	E	Q	L	R	N	A	L	W	H	T	G	D	T	E
Template Known Secondary structure												T	.	.	.	.	.	.	.	.	.	.	T									S	S			.	.	.	.			S				S	S						S	S									S	S		T	T									S	S	S		B	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.											.	.	.	610	.	.	.	.	.	.	.	.	.					620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
														1605	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.			.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	.	.	P	K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L	Q	G	G	K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.								.	.																														.	.
Template Conservation																					.	.	.	.																																							.	.
Template Sequence		S	Q	V	R	L	L	W	K	D	P	R	N	V	G	W	K	D	K	K	.	.	.	.	S	Y	R	W	F	L	Q	H	R	P	Q	V	G	Y	I	R	V	R	F	Y	E	G	P	E	L	V	A	D	S	N	V	V	L	D	T	T	M	R	.	.	G	G	R	L	G	V	F	C	F	S	Q	E	N	I	I	W	A
Template Known Secondary structure		T	T								T	T						T	T		.	.	.	.										T	T	T	T									T	T													S		S	.	.	S									S
Template Predicted Secondary structure																					.	.	.	.																																							.	.
Template SS confidence
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680					.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.			.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
		1671	.	.	.	.	.	.	.	.	1680	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	E	A	M	F	K	D	Y	I	K	Q	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	R	Y	R	C	N	D	T	I	P	E	D	Y
Template Known Secondary structure										S			T
Template Predicted Secondary structure
Template SS confidence
		736	.	.	.	740	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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