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Job DescriptionQ9JMS5
Confidence100.00%DateWed Jan 25 15:21:16 GMT 2012
Rank4Aligned Residues259
% Identity18%Templatec2qomB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
Resolution2.66 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1451........1460.........1470.........1480.........1490.........1500.........1510.........1520.........1530
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Query Sequence  RYDIPGQHRYPTLFENLYNNGMWIQFNNNSGSNSEVYDNLKTSYSLNTMMIGGDIYNWTDGYNYSHIGIMGGMGSAANKT
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Template Sequence  LNKRMGDLRD. . . . . . . . EAGAWARIMSGTGSASG. . . . . GFSDNYTHVQVGVDKKHELG. . . . LDLFTGFTVTHTDSSA
Template Known Secondary structure  T




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   1025....1030.... .....1040.........1050. ........1060.........1070. ........1080.......
 
   1531........1540.........1550.........1560.........1570.........1580.........1590.........1600.........1610
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Query Sequence  TSTNNKRATGNVDGYTLGLYHVFQQNISDGLNESERQGLWTYSSIQYMDYDNSVSSTNNFKANYGVNGFRLTGEVGYLKN
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Template Sequence  SADV. . . FSGKTKSVGAGLYASAMFD. . . . . . . . . . SGAYIDLIGKYVHHDNEYTATFA. TRDYSTHSWYAGAEAGYRYH
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   1092... ....1100.........1110.... .....1120.........1130....... ..1140.........1150.......
 
   1611........1620.........1630.........1640... ......1650.........1660.........1670.........1680........
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Query Sequence  IGGIQPSDFYVEPKLYLSHTELSGGVVEDLQGG. . KITYPNSLTIIEPGVFFSYRKTHESTSNDEAMFKDYIKQSVVDAW
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Template Sequence  V. . . . TEDAWIEPQAELVYGSVSGKQFAWKDGMHLSMKDKDYNPLIGRTGVDVGKSFSGKW. . . . . . . . . . . . . . KVTAR
Template Known Secondary structure  ....TT

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   1161 ........1170.........1180.........1190.........1200.........1210....... ..1220..
 
   16891690.........1700........ .1710.........1720.........1730.........1740..... ....1750........
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Query Sequence  FGGGYSFKTGNYSRTNFDSD. . . . MVEYNTSDNFALKSGVEFEFLKDARLLLTSSYSINND. . RNLSFILGGNYYF
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Template Sequence  AGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF
Template Known Secondary structure  T
TTB


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   1225....1230.........1240.........1250.........1260.........1270.........1280.........1290.........1300
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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