Job Description Q9JMS5 Confidence 4.85% Date Wed Jan 25 15:21:16 GMT 2012 Rank 95 Aligned Residues 246 % Identity 10% Template c2o4vA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane Resolution 1.94 Å

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		1494	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.								.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.
Query Sequence		Y	S	L	N	T	M	M	I	G	G	D	I	Y	N	W	T	D	G	Y	N	Y	S	H	I	G	I	M	G	G	M	G	S	A	A	N	K	T	T	S	T	N	N	K	R	A	T	G	N	V	D	.	.	.	.	.	.	.	G	Y	T	L	G	L	Y	H	V	F	Q	Q	N	I	S	D	G	L	N	E	S	E	R
Query Conservation																																																				.	.	.	.	.	.	.
Alig confidence																				.	.	.																														.	.	.	.	.	.	.
Template Conservation																				.	.	.
Template Sequence		N	D	N	V	G	T	G	I	Q	A	S	S	V	V	G	G	M	A	.	.	.	F	L	S	G	S	V	F	S	E	N	N	N	D	T	D	G	D	S	V	K	R	Y	N	L	R	G	V	F	A	P	L	H	E	P	G	N	V	V	H	L	G	L	Q	Y	A	Y	R	D	L	E	D	S	A	V	D	T	R	I	R
Template Known Secondary structure		G			S											T	T	T		.	.	.													B	T	T	S																		T	T															T	T	B						B
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		1567	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.							.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	.	.	.	.	.	.	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.															.	.	.	.	.	.	.							.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.							.	.	.	.
Template Sequence		P	R	M	G	M	R	G	V	S	T	N	G	G	N	D	A	G	S	N	G	N	R	G	L	F	G	G	S	S	A	V	E	G	L	W	K	D	D	S	V	W	G	L	E	G	A	W	A	L	G	A	.	.	.	.	.	.	.	F	S	A	Q	A	E	.	.	.	.	Y	L	R	R	T	V	K	A	E	R	D	R
Template Known Secondary structure				T	T		G	G	G	S		S	S	B				G	G	G	B						B						T	T	S																T	T	.	.	.	.	.	.	.							.	.	.	.										T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.								.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.
		1641	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690		.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		Q	G	G	K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	.	G	G	Y	S	F	K	T	G	N	Y	S	R	T	N	F	D	S	D	M	V	E	Y	N	T	S	D	N	F	A
Query Conservation																																																				.
Alig confidence									.	.	.	.	.																																							.
Template Conservation									.	.	.	.	.
Template Sequence		E	D	L	K	A	S	G	.	.	.	.	.	Y	Y	A	Q	L	A	Y	T	L	T	G	E	P	R	L	Y	K	L	D	G	A	K	F	D	T	I	K	P	E	N	K	E	I	G	A	W	E	L	F	Y	R	Y	D	S	I	K	V	E	D	D	N	I	V	V	D	S	A	T	R	E	V	G	D	A	K	G	K	T
Template Known Secondary structure									.	.	.	.	.									T	T								T	T	T	T								S		T	T	T																	T	T			S			S	S	B		S	S
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.									.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		L	K	S	G	V	E	F	E	F	L	K	D	A	R	L	L	L	T	S	S	Y	S	.	.	.	.	.	.	.	.	I	N	N	D	R	N	L	S	F	I	L	G	G	N	Y	Y	F
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	L	G	V	N	W	Y	A	N	E	A	V	K	V	S	A	N	Y	V	K	A	K	T	D	K	I	S	N	A	N	G	D	D	S	G	D	G	L	V	M	R	L	Q	Y	V	F
Template Known Secondary structure											S	S	S														S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions