Job Description Q9JMS5 Confidence 7.82% Date Wed Jan 25 15:21:16 GMT 2012 Rank 62 Aligned Residues 133 % Identity 13% Template c2k4tA_ PDB info PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles Resolution UNK

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		1581	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L	Q	G	G	K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	.	.
Query Conservation																																																																																.	.
Alig confidence																																	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	G	L	E	F	T	S	S	G	S	A	N	T	E	T	T	K	V	T	G	S	L	E	T	K	Y	R	W	T	E	.	.	.	.	.	.	.	Y	G	L	T	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	W	N	T	D	N	T	L	G	T	E	I	T	V	E
Template Known Secondary structure		T	T	T											S	S	S															S	.	.	.	.	.	.	.	B						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.																					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
						1659	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	G	G	Y	S	F	K	T	G	N	Y	S	R	T	N	F	D	S	D	M	V	E	Y	N	T	S	D	N	F	A	L	K	S	G	V	E	F	E	F	L	K	D	A	R	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Q	L	A	R	G	L	K	L	T	F	D	S	S	F	S	P	N	T	G	K	K	N	A	K	I	K	T	G	Y	K	R	E	H	I	N	L	G	C	D	M	D	F	D	I	A	G	P	S	I	R	G	A	L	V	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	G	W	L	A
Template Known Secondary structure				T	T													T	T	T														S	S										S	S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																		.	.	.	.	150	.
		1735	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	S	S	Y	S	I	N	N	D	R	N	L	S	F	I	L	G	G	N	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	Q	M	N	F	E	T	A	K	S	R	V	T	Q	S	N	F	A	V	G	Y	K
Template Known Secondary structure									T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions