Job Description Q9JMS5 Confidence 97.67% Date Wed Jan 25 15:21:16 GMT 2012 Rank 17 Aligned Residues 145 % Identity 21% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		1564	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	R	Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S	H	T	E	L	S	G	G	V	V	E	D	L	Q	G	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.						.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.						.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	.	.	.	.	.	.	Y	V	G	F	E	.	.	.	.	M	G	Y	D	W	L	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		S	S													S	S	.	.	.	.	.	.	S					.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.						.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.														20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.					.	.	.	.	.	.
		1644	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	G	G	Y	S	F	K	T	G	N	Y	S	R	T	N	F	D	S	D	M	V	E	Y	N	T	S	D	N	F	A	L	K	S	G
Query Conservation
Alig confidence		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	G	R	M	P	R	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	K	L	G	T	D	D	.	.	.	.	.	.	.	.	.	.	.	.	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G
Template Known Secondary structure		.	.	.	.		S	S	S	S															T	T		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.													S	S	B						S	S	S						B
Template Predicted Secondary structure		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.													.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		1724	.	.	.	.	.	1730	.	.			.	.	.	.	.	.	.	1740	.	.		.	.	.	.	.		.	.	1750	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.											.						.
Query SS confidence											.	.											.						.
Query Sequence		V	E	F	E	F	L	K	D	A	.	.	R	L	L	L	T	S	S	Y	S	I	.	N	N	D	R	N	.	L	S	F	I	L	G	G	N	Y	Y	F
Query Conservation											.	.											.						.
Alig confidence											.	.											.						.
Template Conservation
Template Sequence		V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	N	A	S	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure							S	S	S		S	S	S											S	S	S	S													S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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