Job Description Q9JMS5 Confidence 93.62% Date Wed Jan 25 15:21:16 GMT 2012 Rank 25 Aligned Residues 226 % Identity 15% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		1477	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	N	S	G	S	N	S	E	V	Y	D	N	L	K	T	S	Y	S	L	N	T	M	M	I	G	G	D	I	Y	N	W	T	D	G	Y	N	Y	S	H	I	G	I	M	G	G	M	G	S	A	A	N	K	T	T	S	T	N	N	K	R	A	T	G	N	V	D	G	Y	T	L	G	L	Y	H	V	F	Q	Q	N
Query Conservation
Alig confidence																																				.	.	.	.																														.
Template Conservation																																				.	.	.	.																														.
Template Sequence		Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	.	.	.	.	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	.	W	K	I	A	P	D	W	D	V	K	L	T
Template Known Secondary structure										T	T	T	T				S																	S	S	.	.	.	.																	S	S		T	T									.												S
Template Predicted Secondary structure																																				.	.	.	.																														.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.
		1557	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	D	G	L	N	E	S	E	R	Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	A	N	Y	G	V	N	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S	H	T	E	L	S	G	G	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.											.	.	.	.											.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.											.	.	.	.											.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	.	.	.	.	.	.	.	E	T	E	T	G	L	Q	Y	T	F	.	.	.	.	N	E	T	V	A	L	R	V	N	Y	.	.	.	Y	L	E	R	G	F	N	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S	S														S									S				.	.	.	.	.	.	.											.	.	.	.	S	S	S	B							.	.	.								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.											.	.	.	.											.	.	.
Template SS confidence
												124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.								.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.
		1637	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	D	L	Q	G	G	K	I	T	Y	P	N	S	L	T	I	I	E	P	G	V	F	F	S	Y	R	K	T	H	E	S	T	S	N	D	E	A	M	F	K	D	Y	I	K	Q	S	V	V	D	A	W	F	G	G	G	Y	S	F	K	T	G	N	Y	S	R	T	N	F	D	S	D	M	V	E	Y	N	T	S	D
Query Conservation
Alig confidence												.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation												.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		D	D	S	R	N	N	G	E	F	S	.	.	.	.	.	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	.	.	.	.	.	D	W	Q	D	D	I	E	R	E	G	H	D
Template Known Secondary structure		S	T	T			T	T				.	.	.	.	.													T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	.	.	.	.	.	T	T	T	T			S
Template Predicted Secondary structure												.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.
		1717	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.						.	.	.	.	.	.	.	1750		.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.									.
Query SS confidence																												.	.	.	.	.									.
Query Sequence		N	F	A	L	K	S	G	V	E	F	E	F	L	K	D	A	R	L	L	L	T	S	S	Y	S	I	.	.	.	.	.	N	N	D	R	N	L	S	F	.	I	L	G	G	N	Y	Y	F
Query Conservation																												.	.	.	.	.									.
Alig confidence																												.	.	.	.	.									.
Template Conservation
Template Sequence		F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Template Known Secondary structure														S	S	S															S	S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions