Job Description Q9JMS5 Confidence 90.62% Date Wed Jan 25 15:21:16 GMT 2012 Rank 29 Aligned Residues 173 % Identity 14% Template c2f1tB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Resolution 3.00 Å

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		1473	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	Q	F	N	N	N	S	G	S	N	S	E	V	Y	D	N	L	K	T	S	Y	S	L	N	T	M	M	I	G	G	D	I	Y	N	W	T	D	G	Y	N	Y	S	H	I	G	I	M	G	G	M	G	S	A	A	N	K	T	T	S	T	N	N	K	R	A	T	G	N	V	D	G	Y	T	L	G	L	Y	H	V
Query Conservation
Alig confidence																																			.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		F	M	R	A	G	S	A	T	V	R	P	T	E	G	G	G	F	S	V	T	N	N	T	Q	L	G	L	T	F	T	Y	M	A	.	.	.	.	.	.	T	D	N	I	G	V	E	L	L	A	A	T	P	F	R	H	K	I	G	T	R	A	T	G	D	I	A	T	V	H	H	L	P	P	T	L	M	A	Q	W	Y
Template Known Secondary structure																																			.	.	.	.	.	.		T	T									S									T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		1553	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.					.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		F	Q	Q	N	I	S	D	G	L	N	E	S	E	R	Q	G	L	W	T	Y	S	S	I	Q	Y	M	D	Y	D	N	S	V	S	S	T	N	N	F	K	.	.	.	.	A	N	Y	G	V	N	G	F	R	L	T	G	E	V	G	Y	L	K	N	I	G	G	I	Q	P	S	D	F	Y	V	E	P	K	L	Y	L	S
Query Conservation																																									.	.	.	.
Alig confidence				.	.	.	.	.	.	.																															.	.	.	.																					.	.	.	.							.	.
Template Conservation				.	.	.	.	.	.	.																																																							.	.	.	.							.	.
Template Sequence		F	G	.	.	.	.	.	.	.	D	A	S	S	K	F	R	P	Y	V	G	A	G	I	N	Y	T	T	F	F	D	N	G	F	N	D	H	G	K	E	A	G	L	S	D	L	S	L	K	D	S	W	G	A	A	G	Q	V	G	V	D	Y	L	I	.	.	.	.	N	R	D	W	L	V	.	.	N	M	S	V	W
Template Known Secondary structure			S	.	.	.	.	.	.	.		T	T		S																										T	T																							.	.	.	.	S	S	S				.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.																																																							.	.	.	.							.	.
Template SS confidence
		89	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150			.	.	.	.	.
		1629	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.		.	.	.	.	.	.	.	1660	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		H	T	E	L	S	G	G	V	V	E	D	L	Q	G	G	K	I	T	Y	P	N	S	L	T	.	I	I	E	P	G	V	F	F	S	Y	R	K	T	H
Query Conservation																										.
Alig confidence																										.										.	.
Template Conservation																																				.	.
Template Sequence		Y	M	D	I	D	T	T	A	N	Y	K	L	G	G	A	Q	Q	H	D	S	V	R	L	D	P	W	V	F	M	F	S	A	G	Y	.	.	R	F	H
Template Known Secondary structure														S	S																					.	.
Template Predicted Secondary structure																																				.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions