Job Description P27431 Confidence 100.00% Date Thu Jan 5 11:43:58 GMT 2012 Rank 4 Aligned Residues 202 % Identity 19% Template c3uyjA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg Resolution 2.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																					.																.	.																				.
Query SS confidence																					.																.	.																				.
Query Sequence		M	E	Y	Q	L	T	L	N	W	P	D	F	L	E	R	H	W	Q	K	.	R	P	V	V	L	K	R	G	F	N	N	F	I	D	P	.	.	I	S	P	D	E	L	A	G	L	A	M	E	S	E	V	D	S	R	L	.	V	S	H	Q	D	G	K	W	Q	V	S	H	G	P	F	E	S	Y	D	H	L	G	E
Query Conservation																					.																.	.																				.
Alig confidence																					.																.	.																				.
Template Conservation
Template Sequence		V	P	R	L	H	R	P	S	L	Q	H	F	R	E	Q	F	L	V	P	G	R	P	V	I	L	K	G	V	A	D	H	W	P	C	M	Q	K	W	S	L	E	Y	I	Q	E	I	A	G	C	R	T	V	P	V	E	V	G	S	R	Y	T	D	E	E	W	S	Q	T	L	M	T	V	N	E	F	I	S	K	Y	I
Template Known Secondary structure							S										T	T	T	T	T							S	S	S	T	T	S																T	T	S							S		T	T	S	G	G	G																T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		77	.						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.																													.	.	.	.
Query SS confidence				.	.	.	.	.																													.	.	.	.
Query Sequence		T	N	.	.	.	.	.	W	S	L	L	V	Q	A	V	N	H	W	H	E	P	T	A	A	L	M	R	P	F	R	E	L	P	D	W	.	.	.	.	R	I	D	D	L	M	I	S	F	S	V	P	G	G	G	V	G	P	H	L	D	Q	Y	D	V	F	I	I	Q	G	T	G	R	R	R	W	R	V	G	E	K
Query Conservation				.	.	.	.	.																													.	.	.	.
Alig confidence				.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		V	N	E	P	R	D	V	G	Y	L	A	Q	H	Q	L	F	D	Q	I	P	E	L	K	Q	D	I	S	I	P	D	Y	C	S	L	G	D	G	E	E	E	E	I	T	I	N	A	W	F	G	P	Q	G	T	I	S	P	L	H	Q	D	P	Q	Q	N	F	L	V	Q	V	M	G	R	K	Y	I	R	L	Y	S	P
Template Known Secondary structure		S	S			S	S			B										S	G	G	G	G	G	G					G	G	G	G	G	S	S	S		G	G	G										T	T									S	S									S									G
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		148	.	150	.	.	.	.	.										.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.											.	.
Query SS confidence										.	.	.	.	.	.	.	.	.											.	.
Query Sequence		L	Q	M	K	Q	H	C	P	.	.	.	.	.	.	.	.	.	H	P	D	L	L	Q	V	D	P	F	.	.	E	A	I	I	D	E	E	L	E	P	G	D	I	L	Y	I	P	P	G	F	P	H	E	G	Y	A	L	E	N	A	M	N	Y	S	V	G	F
Query Conservation										.	.	.	.	.	.	.	.	.											.	.
Alig confidence										.	.	.	.	.	.	.	.	.											.	.
Template Conservation
Template Sequence		Q	E	S	G	A	L	Y	P	H	N	T	S	Q	V	D	V	E	N	P	D	L	E	K	F	P	K	F	A	K	A	P	F	L	S	C	I	L	S	P	G	E	I	L	F	I	P	V	K	Y	W	H	Y	V	R	A	L	D	L	S	F	S	V	S	F	W	W
Template Known Secondary structure		G	G	G	G	G	G		B			B	B	S	S		T	T	S			T	T	T		T	T	S	T	T										T	T							T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions