Job Description P27431 Confidence 99.57% Date Thu Jan 5 11:43:58 GMT 2012 Rank 14 Aligned Residues 200 % Identity 18% Template c2xxzA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain Resolution 1.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.			30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60												.	.	.	.	.
Predicted Secondary structure																				.								.	.			.																														.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query SS confidence																				.								.	.			.																														.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query Sequence		L	T	L	N	W	P	D	F	L	E	R	H	W	Q	K	R	P	V	.	V	L	K	R	G	F	N	.	.	N	F	.	I	D	P	I	S	P	D	E	L	A	G	L	A	M	E	S	E	V	D	S	R	L	V	S	H	Q	D	G	K	.	.	.	.	.	.	.	.	.	.	.	W	Q	V	S	H	.	.	.	.
Query Conservation																				.								.	.			.																														.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Alig confidence													.	.						.								.	.			.																														.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Conservation													.	.
Template Sequence		F	S	P	V	L	L	Q	F	C	T	D	.	.	P	R	N	P	I	T	V	I	R	G	L	A	G	S	L	R	L	N	L	G	L	F	S	T	K	T	L	V	E	A	S	G	E	H	T	V	E	V	R	T	Q	V	Q	Q	P	S	D	E	N	W	D	L	T	G	T	R	Q	I	W	P	C	E	S	S	R	S	H
Template Known Secondary structure		S	S										.	.	T	T		S						S						T			G	G	G	G	S									T	T													T	T			B		T	T	S	S	S	B		S	B
Template Predicted Secondary structure													.	.
Template SS confidence
		1194	.	.	.	.	.	1200	.	.	.	.			.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.
		66	.	.	.	70	.	.	.									.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																			.	.	110	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	F	E	S	Y	D	H	.	.	.	.	.	.	.	.	L	G	E	T	N	W	S	L	L	V	Q	A	V	N	H	W	H	E	P	.	.	.	T	A	A	L	M	R	P	F	R	E	L	P	D	W	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	D	L	M	I	S	F	S
Query Conservation										.	.	.	.	.	.	.	.																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	I	A	K	Y	A	Q	Y	Q	A	S	S	F	Q	E	S	L	Q	E	E	H	H	I	I	K	F	G	T	N	I	D	L	S	D	A	K	R	W	K	P	Q	L	Q	E	L	L	K	L	P	A	F	M	R	V	T	S	T	G	N	M	L	S	H	V	G	H	T	I	L	G	M	N	T	V	Q	L	Y	M	K
Template Known Secondary structure																	T	T		S																												T	T	S		G	G	G		T	T	T	T				S			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		1272	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	G	G	G	V	G	P	H	L	D	Q	Y	D	.	.	.	V	F	I	I	Q	G	T	G	R	R	R	W	R	V	G	E	K	L	Q	M	K	Q	H	C	P	H	P	D	L	L	Q	V	D	P	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	I	D	E	E	L	E	P	G	D	I
Query Conservation																.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	G	S	R	T	P	G	H	Q	E	N	N	N	F	C	S	V	N	I	N	I	G	P	G	D	C	E	W	F	A	V	H	E	H	Y	W	E	T	I	S	A	F	C	D	R	H	G	V	D	Y	L	T	G	S	W	W	P	I	L	D	D	L	Y	A	S	N	I	P	V	Y	R	F	V	Q	R	P	G	D	L
Template Known Secondary structure			T	T									G	G	G											S									G	G	G											T	T			T	T	T	S		B										T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		1379	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	I	P	P	G	F	P	H	E	G	Y	A	L	E	N	A	M	N	Y	S	V	G	F	R	A	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	W	I	N	A	G	T	V	H	W	V	Q	A	T	G	W	C	N	N	I	A	W	N	V	G	P	L	T
Template Known Secondary structure						T	T								S	S	S										S		T
Template Predicted Secondary structure
Template SS confidence
		1459	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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