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Job DescriptionP28304
Confidence100.00%DateThu Jan 5 11:44:39 GMT 2012
Rank15Aligned Residues319
% Identity29%Templatec1yb5A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structure of human zeta-crystallin with bound nadp
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10........ .20.........30.........40.........50..... ....60.........70........
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Query Sequence  MATRIEFHKHGGPEVLQA. VEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPP. SLPSGLGTEAAGIVSKVGSGVKH
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Template Sequence  LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA
Template Known Secondary structure  SS
SSGGG




TT

T
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SSB


S

TT
TT
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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   7980.........90.........100.........110.........120.........130.........140.........150........
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Query Sequence  IKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIAC
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Template Sequence  FKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAAC
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TT
S

SS
SSBSGGG

TTS
TTTTTS


TT
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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  QWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSF
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Template Sequence  QIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVV
Template Known Secondary structure  TT
SSTT
STTSTT
TT
S

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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   239240.........250.........260.........270.........280.........290.........300.........310........
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Query Sequence  GNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRA
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Template Sequence  GSRGT. . IEINPRDTMAKESSIIGVTL. . . FSSTKEEFQQYAAALQAGMEIGWLKP. . VIGSQYPLEKVAEAHENIIHGS
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TTTT


G...GG

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   247..250. ........260.........270. ........280.........290....... ..300.........310.........
 
   319320......
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Query Sequence  . TQGSSLLI
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Template Sequence  GATGKMILL
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SS
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   320........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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