Job Description P28304 Confidence 100.00% Date Thu Jan 5 11:44:39 GMT 2012 Rank 30 Aligned Residues 317 % Identity 19% Template c1y9eB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein yhfp; PDBTitle: crystal structure of bacillus subtilis protein yhfp with2 nad bound Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		M	A	T	R	I	E	F	H	K	H	G	G	P	E	V	L	Q	A	V	E	F	T	P	A	D	P	A	E	N	E	I	Q	V	E	N	K	A	I	G	I	N	F	I	D	T	Y	I	R	S	G	L	Y	P	P	P	.	S	L	P	S	G	L	G	T	E	A	A	G	I	V	S	K	V	G	S	G	V	K	H	I
Query Conservation																																																									.
Alig confidence																																																									.																	.	.
Template Conservation																																																																										.	.
Template Sequence		L	F	Q	A	L	Q	A	E	K	N	A	D	D	V	S	V	H	V	K	T	I	S	T	E	D	L	P	K	D	G	V	L	I	K	V	A	Y	S	G	I	N	Y	K	D	G	L	A	G	K	A	G	G	N	I	V	R	E	Y	P	L	I	L	G	I	D	A	A	G	T	V	V	S	.	.	S	N	D	P	R	F
Template Known Secondary structure					B							T	T					B						G	G	G	S		S	S	S																			S	T	T		S				S	S						S								S	.	.		S		T	T
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																.	.	.	.	.																																			.	.	.
Query SS confidence																.	.	.	.	.																																			.	.	.
Query Sequence		K	A	G	D	R	V	V	Y	A	Q	S	A	L	G	.	.	.	.	.	A	Y	S	S	V	H	N	I	I	A	D	K	A	A	I	L	P	A	A	I	S	F	E	Q	A	A	A	S	F	L	K	G	L	T	.	.	.	V	Y	Y	L	L	R	K	T	Y	E	I	K	P	D	E	Q	F	L	F	H	A	A	A	G
Query Conservation																.	.	.	.	.																																			.	.	.
Alig confidence																.	.	.	.	.																																			.	.	.
Template Conservation
Template Sequence		A	E	G	D	E	V	I	A	T	S	Y	E	L	G	V	S	R	D	G	G	L	S	E	Y	A	S	V	P	G	D	W	L	V	P	L	P	Q	N	L	S	L	K	E	A	X	V	Y	G	T	A	G	F	T	A	A	L	S	V	H	R	L	E	Q	N	G	L	S	P	E	K	G	S	V	L	V	T	G	A	T	G
Template Known Secondary structure			T	T							S	T	T	B	T	T	T	B			S	S	B	S						G	G	G						T	T																									T	T	T			T	T	S						S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	L	I	A	C	Q	W	A	K	A	L	G	A	K	L	I	G	T	V	G	T	A	Q	K	A	Q	S	A	L	K	A	G	A	W	Q	V	I	N	Y	R	E	E	D	L	V	E	R	L	K	E	I	T	G	G	K	K	V	R	V	V	Y	D	S	V	G	R	D	T	W	E	R	S	L	D	C	L	Q	R
Query Conservation
Alig confidence																																													.	.
Template Conservation																																													.	.
Template Sequence		G	V	G	G	I	A	V	S	X	L	N	K	R	G	Y	D	V	V	A	S	T	G	N	R	E	A	A	D	Y	L	K	Q	L	G	A	S	E	V	I	S	R	E	D	.	.	V	Y	D	G	T	L	K	A	L	S	K	Q	Q	W	Q	G	A	V	D	P	V	G	G	K	Q	L	A	S	L	L	S	K	I	Q	Y
Template Known Secondary structure														T	T								S		T	T	T							T	T		S								.	.		S	S	S				S	S						S					S											T	T			T
Template Predicted Secondary structure																																													.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	L	M	V	S	F	G	N	S	S	G	A	V	T	G	V	N	L	G	I	L	N	Q	K	G	S	L	Y	V	T	R	P	S	L	Q	G	Y	I	T	T	R	E	E	L	T	E	A	S	N	E	L	F	S	L	I	A	S	G	V	I	K	V	D	V	A	E	Q	Q	K	Y	P	L	K	D	A	Q	R	A	H
Query Conservation
Alig confidence																																		.	.	.																													.	.
Template Conservation																																		.	.	.																													.	.
Template Sequence		G	G	S	V	A	V	S	G	L	T	G	G	G	E	V	P	A	T	V	Y	P	F	I	L	R	G	V	S	L	L	G	I	.	.	.	D	S	V	Y	C	P	X	D	V	R	A	A	V	W	E	R	X	S	S	D	L	K	P	D	Q	L	L	T	.	.	I	V	D	R	E	V	S	L	E	E	T	P	G	A	L
Template Known Secondary structure		T									T	T		S						S														.	.	.		S	T	T													T	T	T	T	T			S		S	G	G	.	.	G							S	T	T
Template Predicted Secondary structure																																		.	.	.																													.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	L	E	S	R	A	T	Q	G	S	S	L	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	I	L	Q	N	R	I	Q	G	R	V	I	V	K
Template Known Secondary structure				S	S	S	S			S	S					B
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions