Phyre 2 alignment of P28304 with c1rjwA

Job Description P28304
Confidence 100.00% Date Thu Jan 5 11:44:39 GMT 2012

Rank 44 Aligned Residues 307

% Identity 25% Template c1rjwA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of nad(+)-dependent alcohol dehydrogenase2 from bacillus stearothermophilus strain lld-r

Resolution 2.35 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence	A	T	R	I	E	F	H	K	H	G	G	P	E	V	L	Q	A	V	E	F	T	P	A	D	P	A	E	N	E	I	Q	V	E	N	K	A	I	G	I	N	F	I	D	T	Y	I	R	S	G	L	Y	P	P	P	.	S	L	P	S	G	L	G	T	E	A	A	G	I	V	S	K	V	G	S	G	V	K	H	I	K
Query Conservation																																																							.
Alig confidence													.	.																																									.
Template Conservation													.	.
Template Sequence	M	K	A	A	V	V	E	Q	F	K	E	P	.	.	L	K	I	K	E	V	E	K	P	T	I	S	Y	G	E	V	L	V	R	I	K	A	C	G	V	C	H	T	D	L	H	A	A	H	G	D	W	P	V	K	P	K	L	P	L	I	P	G	H	E	G	V	G	I	V	E	E	V	G	P	G	V	T	H	L	K
Template Known Secondary structure						B	S	S	T	T	S		.	.													T	T																					T		S	S	S				S	S	B				S											T	T			S
Template Predicted Secondary structure													.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.																												.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	G	D	R	V	V	Y	A	Q	S	A	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	S	S	V	H	N	I	I	A	D	K	A	A	I	L	P	A	A	I	S	F	E	Q	A	A	A	S	F	L	K	G	L	T	V	Y	Y	L	L	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation																																																																	.	.
Template Sequence	V	G	D	R	V	G	I	P	W	L	Y	S	A	C	G	H	C	D	Y	C	L	S	G	Q	E	T	L	C	E	H	Q	K	N	A	G	Y	S	V	D	G	G	Y	A	E	Y	C	R	A	A	A	D	Y	V	V	K	I	P	D	N	L	S	F	E	E	.	.	A	A	P	I	F	C	A	G	V	T	T	Y	K	A
Template Known Secondary structure	T	T							S						S		S					T	T		G	G	G		T	T				B	T	T	T	B			S	S	B	S						G	G	G						T	T	S					.	.		G	G	G	G	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.

	134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	T	Y	E	I	K	P	D	E	Q	F	L	F	H	A	A	A	G	G	V	G	L	I	A	C	Q	W	A	K	A	L	G	A	K	L	I	G	T	V	G	T	A	Q	K	A	Q	S	A	L	K	A	G	A	W	Q	V	I	N	Y	R	E	E	D	L	V	E	R	L	K	E	I	T	G	G	K	K	V	R	V	V
Query Conservation
Alig confidence																																																																									.
Template Conservation																																																																									.
Template Sequence	L	K	V	T	G	A	K	P	G	E	W	V	A	I	Y	G	I	G	G	L	G	H	V	A	V	Q	Y	A	K	A	M	G	L	N	V	V	A	V	D	I	G	D	E	K	L	E	L	A	K	E	L	G	A	D	L	V	V	N	P	L	K	E	D	A	A	K	F	M	K	E	K	V	.	G	G	V	H	A	A	V
Template Known Secondary structure					T			T	T									S	T	T											T	T								S											T	T		S					T	T	T	S											.	S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.

	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	D	S	V	G	R	D	T	W	E	R	S	L	D	C	L	Q	R	R	G	L	M	V	S	F	G	N	S	S	G	A	V	T	G	V	N	L	G	I	L	N	Q	K	G	S	L	Y	V	T	R	P	S	L	Q	G	Y	I	T	T	R	E	E	L	T	E	A	S	N	E	L	F	S	L	I	A	S	G	V	I	K
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.
Template Sequence	V	T	A	V	S	K	P	A	F	Q	S	A	Y	N	S	I	R	R	G	G	A	C	V	L	V	G	L	P	P	E	E	M	P	I	P	I	F	D	T	V	L	N	G	I	K	I	I	G	S	I	.	.	.	.	.	.	.	.	.	.	V	G	T	R	K	D	L	Q	E	A	L	Q	F	A	A	E	G	K	V	K
Template Known Secondary structure		S	S																										S	S												T	T								.	.	.	.	.	.	.	.	.	.	S															T	T	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.											.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	D	V	A	E	Q	Q	K	Y	P	L	K	D	A	Q	R	A	H	E	I	L	E	S	R	A	T	Q	G	S	S	L	L	I
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence	T	.	.	.	I	I	E	V	Q	P	L	E	K	I	N	E	V	F	D	R	M	L	K	G	Q	I	N	G	R	V	V	L	T
Template Known Secondary structure		.	.	.							G	G	G										T	T			S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
	306				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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