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Job DescriptionP28304
Confidence100.00%DateThu Jan 5 11:44:39 GMT 2012
Rank27Aligned Residues310
% Identity23%Templatec1pl6A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:sorbitol dehydrogenase; PDBTitle: human sdh/nadh/inhibitor complex
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.... .....60.........70........
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Query Sequence  ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP. . . PSLPSGLGTEAAGIVSKVGSGVKH
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Template Sequence  NLSLVVH. . . GPGDLRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHEASGTVEKVGSSVKH
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TT

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   8.10.... .....20.........30.........40.........50.........60.........70.........80....
 
   7980.........90... ......100.........110.........120.........130.
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Query Sequence  IKAGDRVVYAQSALG. . . . . . . . . . . . . . . . . . . . . . . . . . . AYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYL
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Template Sequence  LKPGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHAC
Template Known Secondary structure 

TT

S
SS

TT
GGG
TT
TTSTTS



BSGGG

TTS
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   132.......140.........150.........160.........170.........180.........190.........200...... ...
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Query Sequence  LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITG. . GKK
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Template Sequence  RRG. . GVTLGHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK
Template Known Secondary structure  ..T

TT


STT
SS
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   165.. ..170.........180.........190.........200.........210.........220.........230.........240..
 
   210.........220.........230.........240.........250.........260.........270.........280.........
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Query Sequence  VRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIAS
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Template Sequence  PEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAAIREVDIKGVFRY. . . . . . . . . . CNTWPVAISXLAS
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S
S

S
TT

S


SS



TTT


S
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T
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   243......250.........260.........270.........280.........290......... 300.........310..
 
   290.........300.........310.........320.......
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Query Sequence  GVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP
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Template Sequence  KSVNVKPLVTHRFPLEKALEAFETFKKGLG. LKIXLKC
Template Known Secondary structure  TS


GGGGGGTT
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   313......320.........330.........340.. .......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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