Email l.a.kelley@imperial.ac.uk Description P0ACG1 Date Thu Jan 5 11:18:06 GMT 2012 Unique Job ID 8f4b63b57ffcd3ce

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nr7A_ 99.7 54 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83 2 d1hnra_ 99.6 70 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 3 c2levA_ 99.3 31 PDB header:transcription regulator/dna Chain: A: PDB Molecule:ler; PDBTitle: structure of the dna complex of the c-terminal domain of ler 4 c2l92A_ 98.7 41 PDB header:dna binding protein Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns; PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f 5 c2jr1A_ 98.6 24 PDB header:dna binding protein Chain: A: PDB Molecule:virulence regulator; PDBTitle: solution structure of the dna binding domain of a nucleoid-associated2 protein, h-ns, from the phytopathogen xylella fastidiosa. 6 d1lr1a_ 98.5 58 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 7 d1ov9a_ 98.4 47 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 8 d1ni8a_ 98.3 64 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 9 d1y7ya1 54.8 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 10 d1ayja_ 29.9 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 11 c3gbhC_ 29.8 10 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution 12 c3ivpD_ 27.2 9 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 13 d1i9za_ 24.5 29 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 14 c3bpjD_ 21.8 21 PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j; PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha 15 d1bk8a_ 21.1 43 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 16 c2eq9C_ 21.0 26 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 17 d2cyua1 20.7 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 18 c2eq7C_ 20.5 26 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 19 d1f5va_ 20.2 19 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 20 d1o17a1 19.9 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 d1w4ha1 not modelled 19.1 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22 c3dv0I_ not modelled 18.8 9 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 23 d1zcha1 not modelled 18.8 26 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 24 c2eq8C_ not modelled 17.6 22 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 25 c1w3dA_ not modelled 17.3 9 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 26 d1w85i_ not modelled 17.1 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 27 c2cooA_ not modelled 17.1 17 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase 28 c3gagB_ not modelled 14.7 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution 29 c1zwvA_ not modelled 14.1 17 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 30 c1w4kA_ not modelled 13.8 22 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase e2; PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions 31 c3d6zA_ not modelled 13.6 20 PDB header:transcription regulator/dna Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator; PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine 32 d1brwa1 not modelled 13.4 11 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 33 d1ic8a2 not modelled 13.3 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain 34 c1yw5A_ not modelled 13.2 19 PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans 35 d1bala_ not modelled 12.9 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 36 c1o17A_ not modelled 12.7 20 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 37 d1iwga5 not modelled 12.0 6 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 38 d2ewca1 not modelled 11.6 4 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 39 c2kpjA_ not modelled 11.6 9 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 40 c2xswB_ not modelled 11.4 39 PDB header:hydrolase Chain: B: PDB Molecule:72 kda inositol polyphosphate 5-phosphatase; PDBTitle: crystal structure of human inpp5e 41 d2a6ca1 not modelled 10.8 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 42 c1g6uB_ not modelled 10.1 30 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 43 c2rpbA_ not modelled 9.7 33 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein 44 c2kpoA_ not modelled 9.6 36 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x2 fold protein; PDBTitle: solution nmr structure of de novo designed rossmann 2x2 fold protein,2 northeast structural genomics consortium target or16 45 d1chma1 not modelled 9.6 14 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 46 d1m5ya3 not modelled 9.6 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 47 d1k4ta3 not modelled 9.4 16 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 48 c3bs3A_ not modelled 9.4 5 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 49 c2jvdA_ not modelled 9.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: solution nmr structure of the folded n-terminal fragment of2 upf0291 protein ynzc from bacillus subtilis. northeast3 structural genomics target sr384-1-46 50 c2jo8B_ not modelled 9.3 21 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 51 d1sxjc1 not modelled 8.9 18 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 52 d1iwga6 not modelled 8.6 20 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 53 d2ofya1 not modelled 8.6 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 54 d1r8ea1 not modelled 8.5 20 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 55 d1juba_ not modelled 8.1 19 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 56 c2l5pA_ not modelled 8.1 23 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis 57 c2jeeA_ not modelled 8.1 17 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 58 c3hdlA_ not modelled 8.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:royal palm tree peroxidase; PDBTitle: crystal structure of highly glycosylated peroxidase from royal palm2 tree 59 d2ifaa1 not modelled 7.9 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 60 d2ay0a1 not modelled 7.8 38 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:PutA pre-N-terminal region-like 61 c3bhpA_ not modelled 7.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384 62 d2o38a1 not modelled 7.5 3 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 63 c2o38A_ not modelled 7.5 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 64 d1r3ha2 not modelled 7.4 19 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 65 d1kzyc1 not modelled 7.3 5 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 66 d1iqpa1 not modelled 7.2 18 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 67 c1k5gH_ not modelled 7.1 19 PDB header:signaling protein/signaling activator Chain: H: PDB Molecule:ran-specific gtpase-activating protein; PDBTitle: crystal structure of ran-gdp-alfx-ranbp1-rangap complex 68 d1k5db_ not modelled 7.1 19 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Ran-binding domain 69 d2r1jl1 not modelled 7.1 33 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 70 d1sxjb1 not modelled 7.0 9 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 71 d1je6a2 not modelled 6.8 14 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 72 c3ebwA_ not modelled 6.7 5 PDB header:allergen Chain: A: PDB Molecule:per a 4 allergen; PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches 73 c3ge6B_ not modelled 6.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution 74 c2xstA_ not modelled 6.7 5 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 75 c3clcC_ not modelled 6.6 15 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 76 c3b7hA_ not modelled 6.6 7 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 77 c3qocD_ not modelled 6.6 11 PDB header:hydrolase Chain: D: PDB Molecule:putative metallopeptidase; PDBTitle: crystal structure of n-terminal domain (creatinase/prolidase like2 domain) of putative metallopeptidase from corynebacterium diphtheriae 78 c3il0B_ not modelled 6.6 11 PDB header:hydrolase Chain: B: PDB Molecule:aminopeptidase p; xaa-pro aminopeptidase; PDBTitle: the crystal structure of the aminopeptidase p,xaa-pro aminopeptidase2 from streptococcus thermophilus 79 d1j1va_ not modelled 6.6 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 80 c2q9lA_ not modelled 6.6 20 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 81 d1z3eb1 not modelled 6.5 6 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 82 d1pina2 not modelled 6.5 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 83 c2k23A_ not modelled 6.4 14 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 84 c3rmrA_ not modelled 6.4 32 PDB header:protein binding Chain: A: PDB Molecule:avirulence protein; PDBTitle: crystal structure of hyaloperonospora arabidopsidis atr1 effector2 domain 85 c3bemA_ not modelled 6.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution 86 c3ocaB_ not modelled 6.4 19 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis 87 d1utxa_ not modelled 6.4 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 88 c2l9vA_ not modelled 6.3 16 PDB header:rna binding protein Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a; PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state 89 c3gtzA_ not modelled 6.3 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative translation initiation inhibitor; PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium 90 d1tlha_ not modelled 6.2 16 Fold:Anti-sigma factor AsiA Superfamily:Anti-sigma factor AsiA Family:Anti-sigma factor AsiA 91 d2bjca1 not modelled 6.2 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 92 c2h0uA_ not modelled 6.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori 93 c3i7tA_ not modelled 6.0 8 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 94 c3pvpA_ not modelled 5.8 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 95 c2wl8D_ not modelled 5.8 19 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 96 c2rbfB_ not modelled 5.8 38 PDB header:oxidoreductase/dna Chain: B: PDB Molecule:bifunctional protein puta; PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2) 97 d1r69a_ not modelled 5.7 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 98 d1v8ga1 not modelled 5.7 9 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 99 c2kwvA_ not modelled 5.7 29 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm1 of murine polymerase iota in complex with2 ubiquitin