Job Description P0AAI3 Confidence 99.96% Date Thu Jan 5 11:13:00 GMT 2012 Rank 29 Aligned Residues 247 % Identity 20% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

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		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	T	F	A	D	V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	V	P	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G
Query Conservation
Alig confidence																													.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		P	K	S	L	D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	.	.	.	.	.	.	.	G	E	V	L	D	H	V	L	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	L	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G	D	M
Template Known Secondary structure			S	S	G	G	G			S																			.	.	.	.	.	.	.	T										S	S	T	T	S	S													T								T	T	T			S
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	.	E	G	I	I	V	I	A	A	T	N	R	P	D	V	L	D	P	A
Query Conservation																																																															.
Alig confidence			.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation			.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	.	.	A	I	L	T	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	N	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	E	L	L	Y	S	A	I	E	D	F	Q	I	D	I	Q	P	F	T	L	V	G	A	T	V	R	S	G	L	L	S	S	P
Template Known Secondary structure			.	.	.	.	.	.	.	.					T			T	T							T	G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.												S														S		G	G	G	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.															.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	I	L	K	V	H	M	R	R	V	P	L	A	.	P	D	I	D	A	A	I	I	A	R	G	T	P	G	F	S	G	A	D	L	A	N	L	V	N	E	A	A	L	F	A	A	R	G	N	K	R	V	V	S	M	V	E	F
Query Conservation																																					.
Alig confidence					.	.																															.															.
Template Conservation					.	.																																														.
Template Sequence		L	R	S	.	.	R	F	G	I	I	L	E	L	D	F	Y	T	V	K	E	L	K	E	I	I	K	R	A	A	S	L	M	D	V	E	I	E	D	A	A	A	E	M	I	A	K	R	S	R	G	.	T	P	R	I	A	I	R	L	T	K	R	V	R	D	M	L	T	V	V	K	A	D	R	I	N	T	D	I	V
Template Known Secondary structure				T	.	.	T		S																								T	T			B											T	S	T	T	.																				T		S	S	B
Template Predicted Secondary structure					.	.																																														.
Template SS confidence
		167	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.				.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		E	K	A	K	D	K	I	M	M	G	A	E	R	R	S	M	V	M	T	E	A	Q	K	E	S	T	A	.	.	.	Y	H	E	A	G	H	A	I	I	G	R	L	V	P
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		L	K	T	M	E	V	L	N	I	D	D	E	G	L	D	E	F	D	R	K	I	L	K	T	I	I	E	I	Y	R	G	G	P	V	G	L	N	A	L	A	A	S	L	G
Template Known Secondary structure									T			T	T																	S	T	T			B										T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions