Job Description Q46889 Confidence 100.00% Date Thu Jan 5 12:35:31 GMT 2012 Rank 1 Aligned Residues 380 % Identity 80% Template c3dqqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative trna synthase; PDBTitle: the crystal structure of the putative trna synthase from salmonella2 typhimurium lt2 Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	K	I	G	V	I	A	D	D	F	T	G	A	T	D	I	A	S	F	L	V	E	N	G	L	P	T	V	Q	I	N	G	V	P	T	G	K	M	P	E	A	I	D	A	L	V	I	S	L	K	T	R	S	C	P	V	V	E	A	T	Q	Q	S	L	A	A	L	S	W	L	Q	Q	Q	G	C	K	Q	I	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	K	I	G	V	I	A	D	D	F	T	G	A	T	D	I	A	S	F	L	V	E	N	G	M	P	T	V	Q	I	N	D	V	P	T	G	T	Q	P	E	G	C	D	A	V	V	I	S	L	K	T	R	S	C	P	A	Q	E	A	I	K	Q	S	L	A	A	L	V	W	L	K	K	Q	G	C	Q	Q	V	Y
Template Known Secondary structure			B							S	S													T	T	T								S	S			S				T	T		S									S	S	S																			T		B	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	Y	C	S	T	F	D	S	T	A	K	G	N	I	G	P	V	T	D	A	L	M	D	A	L	D	T	P	F	T	V	F	S	P	A	L	P	V	N	G	R	T	V	Y	Q	G	Y	L	F	V	M	N	Q	L	L	A	E	S	G	M	R	H	H	P	V	N	P	M	T	D	S	Y	L	P	R	L	V	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	Y	C	S	T	F	D	S	T	A	E	G	N	I	G	P	V	T	D	A	L	M	V	A	L	D	T	S	F	T	V	I	S	P	A	L	P	V	N	G	R	T	V	Y	Q	G	Y	L	F	V	M	N	H	L	L	A	E	S	G	M	R	H	H	P	I	N	P	M	T	D	S	Y	L	P	R	L	M	E	A
Template Known Secondary structure						T	T				B	T	T	B	S													T		S								B	G	G	G	T					T	T					T	T			G	G	G	S	G	G	G	G		S	S	S						B
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	T	G	R	C	G	V	V	S	A	H	V	F	E	Q	G	V	D	A	V	R	Q	E	L	A	R	L	Q	Q	E	G	Y	R	Y	A	V	L	D	A	L	T	E	H	H	L	E	I	Q	G	E	A	L	R	D	A	P	L	V	T	G	G	S	G	L	A	I	G	L	A	R	Q	W	A	Q	E	N	G	N	Q
Query Conservation
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		Q	A	Q	G	R	C	G	V	I	P	A	Q	T	L	D	E	G	V	A	A	T	R	A	A	L	S	R	L	Q	Q	E	G	Y	R	Y	A	V	L	D	A	L	N	E	R	H	L	E	I	Q	G	E	V	L	R	D	A	P	L	V	T	G	G	S	G	L	A	M	G	L	A	R	Q	W	A	.	.	.	.	.	.
Template Known Secondary structure			S	S	S																											T	T		S						B	S	S											T	T	T		S					S	S												.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	K	A	G	R	P	L	A	G	R	G	V	V	L	S	G	S	C	S	Q	M	T	N	R	Q	V	A	H	Y	R	Q	I	A	P	A	R	E	V	D	V	A	R	C	L	S	I	E	T	L	A	A	Y	A	H	E	L	A	E	W	V	L	G	Q	E	S	V	L	A	P	L	V	F	A	T	A	S	T	D	A
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	K	S	A	G	Y	P	L	S	G	R	A	V	V	L	S	G	S	C	S	Q	M	T	N	Q	Q	V	A	F	Y	R	Q	H	A	P	T	R	D	V	D	V	A	R	C	L	S	S	E	T	R	E	A	Y	A	E	A	L	A	Q	W	V	L	S	Q	D	S	E	L	A	P	M	I	S	A	T	A	S	T	Q	A
Template Known Secondary structure		.			T	T				S	S																							T	S							G	G	G	G	S	S																	T				S	S
Template Predicted Secondary structure		.
Template SS confidence
			235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	I	Q	Q	Q	Y	G	A	Q	K	A	S	Q	A	V	E	T	L	F	S	Q	L	A	A	R	L	A	A	E	G	V	T	R	F	I	V	A	G	G	E	T	S	G	V	V	T	Q	S	L	G	I	K	G	F	H	I	G	P	T	I	S	P	A	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	A	I	Q	Q	Q	Y	G	A	T	E	A	S	H	A	V	E	A	L	F	S	L	L	A	A	R	L	A	E	G	G	I	T	R	F	I	V	A	G	G	E	T	S	G	V	V	T	Q	S	L	G	I	T	G	F	H	I	G	P	C	I	S	P	G	V	P
Template Known Secondary structure																																T	T								S												T												T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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