Job Description P76097 Confidence 100.00% Date Thu Jan 5 12:18:52 GMT 2012 Rank 1 Aligned Residues 372 % Identity 95% Template c2rjbD_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein ydcj (sf1787)2 from shigella flexneri which includes domain duf1338.3 northeast structural genomics consortium target sfr276 Resolution 2.60 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	A	D	E	I	R	E	Q	F	S	Q	A	M	S	A	M	Y	Q	Q	E	V	P	Q	Y	G	T	L	L	E	L	V	A	D	V	N	L	A	V	L	E	N	N	P	Q	L	H	E	K	M	V	N	A	D	E	L	A	R	L	N	V	E	R	H	G	A	I	R	V	G	T	A	Q	E	L	A	T	L	R	R
Query Conservation
Alig confidence																																																		.	.	.	.
Template Conservation																																																		.	.	.	.
Template Sequence		I	T	A	D	E	I	R	E	Q	F	S	Q	A	X	S	A	X	Y	Q	Q	E	V	P	Q	Y	G	T	L	L	E	L	V	A	D	V	N	L	A	V	L	E	N	N	P	Q	X	V	N	.	.	.	.	A	D	E	L	A	R	L	N	V	E	R	H	G	A	I	R	V	G	T	A	Q	E	L	A	T	L	R	R
Template Known Secondary structure										T											T	T																				T	T					T	T	.	.	.	.	T	T		S	G	G	G	G	G										S	S
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	A	I	M	G	M	Y	P	V	S	Y	Y	D	L	S	Q	A	G	V	P	V	H	S	T	A	F	R	P	I	D	D	A	S	L	A	R	N	P	F	R	V	F	T	S	L	L	R	L	E	L	I	E	N	E	I	L	R	Q	K	A	A	E	I	L	R	Q	R	D	I	F	T	P	R	C	R	Q	L	L	E
Query Conservation
Alig confidence																																		.	.	.	.																.	.	.	.	.	.
Template Conservation																																		.	.	.	.																.	.	.	.	.	.
Template Sequence		X	F	A	I	X	G	X	Y	P	V	S	Y	Y	D	L	S	Q	A	G	V	P	V	H	S	T	A	F	R	P	I	D	D	.	.	.	.	A	S	P	F	R	V	F	T	S	L	L	R	L	E	L	.	.	.	.	.	.	R	Q	K	A	A	E	I	L	R	Q	R	D	I	F	T	P	R	C	R	Q	L	L	E
Template Known Secondary structure						T	T									G	G	G	G	T	S												S	.	.	.	.																.	.	.	.	.	.										S				S
Template Predicted Secondary structure																																		.	.	.	.																.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	E	Q	Q	G	G	F	N	E	T	Q	A	Q	E	F	V	Q	E	A	L	E	T	F	R	W	H	Q	S	A	T	V	D	E	E	T	Y	R	A	L	H	N	E	H	R	L	I	A	D	V	V	C	F	P	G	C	H	I	N	H	L	T	P	R	T	L	D	I	D	R	V	Q	S	M	M	P	E	C	G	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	E	Q	Q	G	G	F	N	E	T	Q	A	Q	E	F	V	Q	E	A	L	E	T	F	R	W	H	Q	L	A	T	V	D	E	E	T	Y	R	A	L	H	N	E	H	R	L	I	A	D	V	V	C	F	P	G	C	H	I	N	H	L	T	P	R	T	L	D	I	D	R	V	Q	S	X	X	P	E	C	G	I
Template Known Secondary structure							S	S			T	T									T	G	G	G	G	S			S	B		S	S										T	T									S	S	S	S				S					B		S		T	T					S	S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	K	I	L	I	E	G	P	P	R	R	E	V	P	I	L	L	R	Q	T	S	F	K	A	L	E	E	T	V	L	F	A	G	Q	K	Q	G	T	H	T	A	R	F	G	E	I	E	Q	R	G	V	A	L	T	P	K	G	R	Q	L	Y	D	D	L	L	R	N	A	G	T	G	Q	D	N	L	T	H	Q	M
Query Conservation
Alig confidence																																				.	.	.
Template Conservation																																				.	.	.
Template Sequence		E	P	K	I	L	I	E	G	P	P	R	R	E	V	P	I	L	L	R	Q	T	S	F	K	A	L	E	E	T	V	L	F	A	G	.	.	.	Q	T	H	T	A	R	F	G	E	I	E	Q	R	G	V	A	L	T	P	K	G	R	Q	L	Y	D	D	L	L	R	N	A	G	T	G	Q	D	N	L	T	H	Q	X
Template Known Secondary structure			B		S			B	S	S				S	S		B	S														B		T	T	.	.	.															B		B																			S	S	S	S	T	T
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	Q	E	T	F	R	T	F	P	D	S	E	F	L	M	R	Q	Q	G	L	A	W	F	R	Y	R	L	T	P	S	G	E	A	H	R	Q	A	I	H	P	G	D	D	P	Q	P	L	I	E	R	G	W	V	V	A	Q	P	I	T	Y	E	D	F	L	P	V	S	A	A	G	I	F	Q	S	N	L	G	N	E
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		H	L	Q	E	T	F	R	T	F	P	D	S	E	F	L	X	R	Q	Q	G	L	A	W	F	R	Y	R	L	T	P	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	I	T	Y	E	D	F	L	P	V	S	S	R	E	A	F	E	Q	A	L	.	.	.
Template Known Secondary structure							G	G	G	S			S							T	T		B								S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B			S													T	T	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.																									.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	T	R	S	H	G	N	A	S	R	E	A	F	E	Q	A	L	G	C	P	V	L	D	E	F	Q	L	Y	Q	E	A	E	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	P	V	L	D	E	F	Q	L	Y	Q	E	A	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.