Phyre 2 alignment of Q46812 with c2imrA

Job Description Q46812
Confidence 100.00% Date Thu Jan 5 12:34:40 GMT 2012

Rank 53 Aligned Residues 343

% Identity 17% Template c2imrA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dr_0824; PDBTitle: crystal structure of amidohydrolase dr_0824 from2 deinococcus radiodurans

Resolution 1.78 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure											.	.																											.
Query SS confidence											.	.																											.
Query Sequence	K	N	V	T	A	V	Q	L	H	P	.	.	A	K	V	Q	E	G	V	D	I	A	I	E	N	D	V	I	V	A	I	G	D	A	L	T	Q	R	.	Y	P	D	A	S	F	K	E	M	H	G	R	I	V	M	P	G	I	V	C	S	H	N	H	F	Y	S	G	L	S	R	G	I	M	A	N	I	A	P	C	P
Query Conservation											.	.																											.
Alig confidence											.	.																											.
Template Conservation
Template Sequence	H	T	P	R	L	L	T	C	D	V	L	Y	T	G	A	Q	S	P	G	G	V	V	V	V	G	E	T	V	A	A	A	G	H	P	D	E	L	R	R	Q	Y	P	H	A	A	E	E	R	A	G	A	V	I	A	P	P	P	V	N	A	H	T	H	L	D	M	S	A	Y	E	F	Q	A	L	P	Y	F	Q	W	I
Template Known Secondary structure									S								S	S							T	T																T	T								S			S	S									S	S														T	S
Template Predicted Secondary structure
Template SS confidence
	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	F	I	S	T	L	K	N	L	W	W	R	L	D	R	A	L	D	E	E	S	L	Y	Y	S	G	L	I	C	S	L	E	A	I	K	S	G	C	T	S	V	I	D	H	H	A	S	P	A	Y	I	G	G	S	L	S	T	L	R	D	A	F	L	K	V	G	L	R	A	M	T	C	F	E	T	T	D	R	N	N
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence	P	E	V	V	I	R	G	.	.	.	.	.	.	.	.	.	.	R	H	L	R	G	V	A	A	A	Q	A	G	A	D	T	L	T	R	L	G	A	G	G	V	G	D	I	V	W	A	.	.	.	.	.	.	.	P	E	V	M	D	A	L	L	A	R	E	D	L	S	G	T	L	Y	F	E	V	L	N	P	F	P
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	T	T																	T	T										S	.	.	.	.	.	.	.									T		T	T											B			G
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
	117	.	.	120	.	.	.											.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	I	K	E	L	Q	E	G	V	E	E	N	I	R	F	A	R	L	I	D	E	A	K	K	A	T	S	E	P	Y	L	V	E	A	H	I	G	A	H	A	P	F	T	V	P	D	A	G	L	E	M	L	R	E	A	V	K	A	T	G	R	G	L	H	I	H	A	A	E	D	L	Y	D	V	S	Y	S	H	H	W
Query Conservation
Alig confidence					.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.
Template Sequence	D	K	A	D	.	.	.	.	.	.	.	E	V	F	A	A	A	R	T	H	L	E	R	W	R	R	L	E	R	P	G	L	R	L	G	L	S	P	H	T	P	F	T	V	S	H	R	L	M	R	L	L	S	D	Y	A	A	G	E	G	L	P	L	Q	I	H	V	A	E	H	P	T	E	L	E	M	F	R	T	G
Template Known Secondary structure	G	G			.	.	.	.	.	.	.															T	T		B	T	T										S	S	S	B																T			B					S		S										S
Template Predicted Secondary structure					.	.	.	.	.	.	.
Template SS confidence
	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

	242	.																											.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Query Sequence	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	L	L	A	R	L	A	Q	F	D	L	I	D	S	K	T	L	V	A	H	G	L	Y	L	S	K	D	D	I	T	L	L	N	Q	R	D	A	F	L	V	H	N	A	R	S	N	M	N	N	H	.
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Template Conservation
Template Sequence	G	G	P	L	W	D	N	R	M	P	A	L	Y	P	H	T	L	A	E	V	I	G	R	E	P	G	P	D	L	T	P	V	R	Y	L	D	E	L	G	V	L	A	A	R	P	T	L	V	H	M	V	N	V	T	P	D	D	I	A	R	V	A	R	A	G	C	A	V	V	T	C	P	R	S	N	H	H	L	E	C
Template Known Secondary structure		S	T	T	G	G	G	S		G	G	G	S		S	S						T	S				T	T											T		G	G	G									S													T													T	T
Template Predicted Secondary structure
Template SS confidence
	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

			295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure	.	.																																						.
Query SS confidence	.	.																																						.
Query Sequence	.	.	V	G	Y	N	H	H	L	S	D	I	R	N	L	A	L	G	T	D	G	I	G	S	D	M	F	E	E	M	K	F	A	F	F	K	H	R	D	.	A	G	G	P	L	W	P	D	S	F	A	K	A	L	T	N	G	N	E	L	M	S	R	N	F	G	A	K	F	G	L	L	E	A	G	Y	K	A	D	L
Query Conservation	.	.																																						.
Alig confidence	.	.																																						.
Template Conservation
Template Sequence	G	T	F	D	W	P	A	F	A	A	A	G	V	E	V	A	L	G	T	D	S	V	A	S	G	E	T	L	N	V	R	E	E	V	T	F	A	R	Q	L	Y	P	G	L	D	P	R	V	L	V	R	A	A	V	K	G	G	Q	R	V	V	G	T	P	F	L	R	R	G	E	T	W	Q	E	G	F	R	W	E	L
Template Known Secondary structure											T	T														S		S		T												T	T	S																							S	T	T	S	B			G	G	G	B	G	G	G
Template Predicted Secondary structure
Template SS confidence
	333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions